Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e08f
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    29   0.37 
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   3.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   4.6  

>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 401 VGDNDRSSSEAATNSSQPT*PPL--HRKPQHSPTQNGPV 511
           V D   S  ++A + + P+ PP+  H KP+ S TQ+ PV
Sbjct: 319 VSDAQNSLGQSAVDLTTPSSPPIPRHTKPKLSTTQSTPV 357


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 461 PPLHRKPQHSPTQNGPVAFLFSRSIPSHS 547
           P  +RKP  +  +N PV   FSR  PSHS
Sbjct: 116 PQSNRKPTEAYRRNSPVKKSFSR--PSHS 142


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 468 STGSHNIRQHKTDPLRSYFPV 530
           S  +H IRQH  D L S+ PV
Sbjct: 750 SVSAHKIRQHVQDSLTSHEPV 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,724
Number of Sequences: 5004
Number of extensions: 37486
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)