Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e08f
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0695 + 5730932-5731198 33 0.22
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 29 2.0
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 2.7
05_04_0286 + 19833114-19834053,19834149-19834165 29 2.7
02_02_0170 + 7395480-7395917 29 3.6
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933... 28 4.7
02_04_0381 - 22497519-22497769,22498157-22498247 28 4.7
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560 28 6.2
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 28 6.2
04_03_1035 - 21887562-21890030 28 6.2
03_02_0883 - 12142550-12142663,12142723-12142782,12142954-12143229 28 6.2
02_01_0172 - 1187408-1187851 28 6.2
03_02_0283 - 7078754-7078856,7079358-7079431,7079995-7080090,708... 27 8.2
>11_01_0695 + 5730932-5731198
Length = 88
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 234 PADLQLLQDVGKRACVRRGGNCDHRPGDCCHSSSCRCNL---WGSNC 365
P + ++ K AC+ GG C RP DCC + C + +GS C
Sbjct: 40 PRLMDVVSAESKLACLPAGGFCMFRPMDCCGNCGCLYPVGVCYGSRC 86
>06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 549 GLCEGIERENKNATGPFCVGECCGFRWSGGQ--VGWLELVAASEELRS 412
G C G +ENKN T PF + WSG + ++E + S+E S
Sbjct: 888 GSCSGENKENKNNTSPF-----SSYSWSGQRKVPSYIEKIVFSQEFIS 930
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 177 YIDP-GDDDLEVNLPDYGEDPADLQLLQD 260
+++P D+ +E PDY EDP +++L +D
Sbjct: 1193 HVEPVADEKMEDEEPDYEEDPEEVELYED 1221
>05_04_0286 + 19833114-19834053,19834149-19834165
Length = 318
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 273 ACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRC 371
AC GG C H GD H C C W S C
Sbjct: 254 ACRATGGVCGH-DGDS-HGDLCLCGDWNSTSNC 284
>02_02_0170 + 7395480-7395917
Length = 145
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 543 CEGIERENKNATGPF--CVGEC-CGFRWSGGQVGWLELVAASEELRSLSPTPTSGRA 382
C G R + G C G CG RW Q G +E V A+E + + T+ RA
Sbjct: 3 CGGWVRPRRRVAGGGVRCRGTIGCGRRWQAQQRGRIEAVTAAEAWEATTAGATAARA 59
>05_06_0051 -
25190803-25191216,25191301-25191891,25193248-25193317,
25193392-25193443,25195368-25195440,25195557-25195646
Length = 429
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 443 SSQPT*PPLHRKPQHSP 493
+S P PPLHR P+H P
Sbjct: 167 ASPPVPPPLHRNPRHRP 183
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Frame = +3
Query: 186 PGDDDLEVNLPDYGEDPADLQLLQDVGKRACVRRGGNCDHRPGDCCH------SSSCRCN 347
P +D + PD+ ++P GK + G CD GDC H SC C+
Sbjct: 46 PDHEDPSPSPPDHEDEPPPPS---SPGKEDVCKGKGCCDWSGGDCKHYCDGYDDKSC-CD 101
Query: 348 LWGSNC 365
W +C
Sbjct: 102 DWSGDC 107
>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
Length = 546
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 216 ASSLPDHRLRDQYKRHEPILL 154
A +LP H +RD +RH P++L
Sbjct: 56 AGALPHHAMRDLARRHGPLML 76
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 39 GRRCDSTYNPTTARESSGRCV 101
GRRC+ P AR SGRC+
Sbjct: 403 GRRCEHDGCPKAARGKSGRCI 423
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +3
Query: 309 PGDCCHSSSCRCNLW-GSNCRCQRMG 383
PG C S SC C +W GS C G
Sbjct: 327 PGPCAPSKSCSCGVWSGSAQLCAGSG 352
>03_02_0883 - 12142550-12142663,12142723-12142782,12142954-12143229
Length = 149
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 496 CWRMLWLPVERRSSRLAGVGRRFRG 422
C ++LW+ RR++RL G GRR G
Sbjct: 55 CGQLLWVLGFRRAARLGGQGRRPAG 79
>02_01_0172 - 1187408-1187851
Length = 147
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 465 GGQVGWLELVAASEELRSLSPTP 397
G GWLE A E LRSL P P
Sbjct: 123 GDAEGWLEEAIADELLRSLPPPP 145
>03_02_0283 -
7078754-7078856,7079358-7079431,7079995-7080090,
7080145-7080270,7080856-7080939,7081458-7081506,
7081630-7081688,7081908-7081925,7082141-7082620
Length = 362
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 414 TGAPLKRRPTPASRLDRRSTGSHNIRQHKTDPLRSYF 524
TGAP+ RP PAS +D R + N + + +F
Sbjct: 238 TGAPILPRPLPASVVDSRISEKDNDAEKENSEEEKHF 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,477,261
Number of Sequences: 37544
Number of extensions: 327125
Number of successful extensions: 1106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -