Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e08f
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024811-6|AAP68913.1| 90|Caenorhabditis elegans Hypothetical ... 27 0.26
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 28 5.6
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 28 5.6
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 27 7.4
Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 27 9.7
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 27 9.7
AL021497-17|CAD56613.1| 138|Caenorhabditis elegans Hypothetical... 27 9.7
>AC024811-6|AAP68913.1| 90|Caenorhabditis elegans Hypothetical
protein Y54E10BL.1 protein.
Length = 90
Score = 26.6 bits (56), Expect(2) = 0.26
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 310 GRWSQLPPRRTQARFPTSCNNCKSAGS-SP*SGKFTSRSSSPGS 182
GR PRR +R P C +C A S + + + S PGS
Sbjct: 42 GRAWSTSPRRRASRIPGLCEHCPPASSGTARNHRKVGESGDPGS 85
Score = 24.6 bits (51), Expect(2) = 0.26
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 475 PVERRSSRLAGVGRRFRGAPVVVSYPHFWKS 383
P+ERR+SR GR FR ++ + W +
Sbjct: 17 PLERRTSRCWEEGRSFRITRIIRTIGRAWST 47
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 270 RACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRCQ 374
R CV C + DC +++ C G C+C+
Sbjct: 170 RKCVESVNECTNGEADCSNNADCFDRADGYECKCR 204
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 270 RACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRCQ 374
R CV C + DC +++ C G C+C+
Sbjct: 170 RKCVESVNECTNGEADCSNNADCFDRADGYECKCR 204
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 410 NDRSSSEAATNSSQPT*PPLHR----KPQHSPTQNGPVAFL 520
N+ S+ E N P+ PP + +PQ PT GP+ F+
Sbjct: 311 NECSADEMDMNDVPPSPPPYRKPAPPQPQAPPTSAGPLGFI 351
>Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical
protein F52F12.2 protein.
Length = 370
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 450 WLELVAASEELRSLSPTPTSGRAPC 376
W +++ A+ R SPTP S + PC
Sbjct: 55 WEDMLPATRLPREASPTPDSNKDPC 79
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 198 DLEVNLPDYGEDPADLQLLQDVGK--RACVRRGGNCDHRPGDCCHSSSCRCNLWGSN-CR 368
DL V+ D D + ++ + VG+ C R C G C +S C N WG C
Sbjct: 1500 DLSVDKEDV--DFSTIKEMHKVGQVHEGCKHRKDFCSTSDGQCSATSKC-VNRWGGRICS 1556
Query: 369 C 371
C
Sbjct: 1557 C 1557
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 198 DLEVNLPDYGEDPADLQLLQDVGK--RACVRRGGNCDHRPGDCCHSSSCRCNLWGSN-CR 368
DL V+ D D + ++ + VG+ C R C G C +S C N WG C
Sbjct: 1500 DLSVDKEDV--DFSTIKEMHKVGQVHEGCKHRKDFCSTSDGQCSATSKC-VNRWGGRICS 1556
Query: 369 C 371
C
Sbjct: 1557 C 1557
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 198 DLEVNLPDYGEDPADLQLLQDVGK--RACVRRGGNCDHRPGDCCHSSSCRCNLWGSN-CR 368
DL V+ D D + ++ + VG+ C R C G C +S C N WG C
Sbjct: 1500 DLSVDKEDV--DFSTIKEMHKVGQVHEGCKHRKDFCSTSDGQCSATSKC-VNRWGGRICS 1556
Query: 369 C 371
C
Sbjct: 1557 C 1557
>AL021497-17|CAD56613.1| 138|Caenorhabditis elegans Hypothetical
protein Y51A2D.20 protein.
Length = 138
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 416 RSSSEAATNSSQPT*PPLHRKPQHSPTQNGPVAFLFSRSIPSHS 547
R+S ++ S+P PP +R P H QN + S P+ S
Sbjct: 32 RNSPMTSSLRSRPPPPPYNRSPAHKIEQNSSFFEPIAHSTPNSS 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,033,586
Number of Sequences: 27780
Number of extensions: 239656
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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