Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e07r
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.6  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 132 TNYHIINTKN*KNVGTYNLNLNKQRFIESI 221
           +NY+  N  N  N   YN  L  + +I +I
Sbjct: 325 SNYNNYNNYNNNNYNNYNKKLYYKNYIINI 354


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 644 SLYNVYKNLKNSINYSVMPEIYLILS*EIFIHIKLLF 534
           SL  +  N++   NY+++ +IY  LS +  + +   F
Sbjct: 104 SLEKLLCNVEAEENYNLLEDIYETLSYDCDVDVSTFF 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,510
Number of Sequences: 438
Number of extensions: 3319
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)