Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e07f
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 38 0.002
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 31 0.17
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 30 0.23
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc... 30 0.31
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 30 0.31
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 29 0.40
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 29 0.53
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 29 0.71
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 28 1.2
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 27 1.6
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 27 2.2
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 27 2.2
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 2.8
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 2.8
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.8
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 3.8
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 26 5.0
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 5.0
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 6.6
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 6.6
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 8.7
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 25 8.7
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 8.7
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/92 (23%), Positives = 43/92 (46%)
Frame = +1
Query: 301 ELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKIS 480
E + + Y + Q+ F R+ ++ +D L LW+ + +EL + K+ +
Sbjct: 53 EKHREAAAYGEAIRQVAFSKDYSRMATVSEDKCLRLWDSTQPDKIELLYQ--KNIPKRCA 110
Query: 481 AICVESSAKNALLGTEGGNIYSLDLSAFTISE 576
+C S + G + G++Y +D + FT SE
Sbjct: 111 DLCFAGS-NEIVFGDKFGDVYCVDENWFTTSE 141
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +1
Query: 280 VYGRPGVELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFE 459
V G +++G + IV + L + DN++ LW +N + V HVF
Sbjct: 348 VISTDGTQVFGVLEGHTDIVLTLDSSEDGVWLATGAKDNTVRLWNLNIEDNVYKCIHVFT 407
Query: 460 GKNKKISAICV 492
G ++A+ +
Sbjct: 408 GHTASVTAVAL 418
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 373 LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGT 525
L S DD+ + LW++N + VFEG + I + E + L G+
Sbjct: 162 LASGADDSRVRLWDLNSSRSMA----VFEGHSSVIRGLTFEPTGSFLLSGS 208
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 30.3 bits (65), Expect = 0.23
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +1
Query: 358 TGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGN 537
TG +++ DD S+H W++ K+ V L+S F+ ++ +I ++C K L+ T
Sbjct: 233 TGEIGMVTGSDDGSVHCWDV--KTGVSLQS--FQFRSSQILSLCFRPKYKMLLVDTFNYE 288
Query: 538 IYSLDL 555
+ S L
Sbjct: 289 LNSYQL 294
>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
kinase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 340
Score = 29.9 bits (64), Expect = 0.31
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 400 LHLWEINEKSLVELKSHVFEGKNKKISAICVE-SSAKNALLGTEGGNIYSLDLSAFTISE 576
LH WE++ V +H+ G + + I E NALL + G +Y L+ F +
Sbjct: 37 LHEWEVDVVPTVHFSNHLGYGATRGSACIPEEVHDLLNALL-QDNGIVYDAILTGFVPNH 95
Query: 577 DVI 585
D+I
Sbjct: 96 DII 98
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.31
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 337 VTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE-LKSH 450
++Q+ + TG+ L S DD ++ +W+ ++ V LK H
Sbjct: 99 ISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGH 137
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 29.5 bits (63), Expect = 0.40
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 298 VELYGQHTNYESIVTQIHF-ITGTGRLISLCDDNSLHLWEINEKSLVELKSHV-FEGKNK 471
VEL G++ N++ V + F +TGT L S DD + LW+ + +L + S V E K +
Sbjct: 279 VELIGEYDNHKCQVWRCRFNVTGT-ILSSSGDDGCVRLWKASYANLFKCISVVSLEKKPE 337
Query: 472 KI 477
K+
Sbjct: 338 KL 339
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 29.1 bits (62), Expect = 0.53
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +1
Query: 325 YESIVTQIHFITGTGRLISLCDDNSLHLWEIN---EKSLVELKSHVFEGKNKKISAICVE 495
++ IV ++ + + IS DN++ +W+ E +L S + + + +K + +
Sbjct: 196 HKDIVERVRSLESSSVFISASADNTVGIWDFERSPETTLESFSSSISKKRRRKNAEFTPQ 255
Query: 496 SSAKNALLGTEGGNIYSLDLSAFTISEDVIY 588
+ A++ L+ EG +D+ F+ V Y
Sbjct: 256 AGARSPLILCEGHTGPVMDI-VFSDDPSVAY 285
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 316 HTNYESIVTQIHFITGTGRLI-SLCDDNSLHLWEIN 420
H ++ V ++ F + I S+ DDN LH+W+ N
Sbjct: 369 HAGHKGTVNEVDFDPFEAQCIASVADDNELHIWKPN 404
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 391 DNSLHLWEI-NEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTE 528
D S HL E+ E VEL++ +EG + + +IC S K GT+
Sbjct: 8 DASSHLNEVLTELESVELENVEYEGPSLQNVSICASPSEKKRKWGTQ 54
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 458 KVKIKRYRPYA*NRQRRTLYWEPKAAT 538
K+ R RPY N + WEP AAT
Sbjct: 13 KISRSRNRPYFFNTETHESLWEPPAAT 39
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 373 LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNI 540
LI+ DDN + +W+ K+ V + EG +S S + G+E G +
Sbjct: 201 LITAGDDNLIKVWDYQTKACV----RILEGHTNNVSFAFFHSKFPIIISGSEDGTV 252
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 316 HTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAI 486
HT VT + F + S DD+++ LW S ++S E + K + ++
Sbjct: 312 HTKRMQRVTAVKFSMDAQYIFSGSDDSNVRLWRARASSRASIRSTREENRLKYLDSL 368
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 373 LISLCDDNSLHLWEINEKSLVELKSHVFEG-KNKKISAICVESSAKNALLGTEGGNIYSL 549
+ ++ +D +L LW N+K+L ++ + G + K I ++ V S+ G G++ S
Sbjct: 251 IATVSEDLTLRLWTWNDKTLT--NTYTYTGHRGKHIWSLVVSSANPIIYTGGNDGSVRSW 308
Query: 550 D 552
D
Sbjct: 309 D 309
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/81 (18%), Positives = 36/81 (44%)
Frame = +1
Query: 313 QHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICV 492
Q ++Y+++ T + + + R+I+ DD + +W++N + F +S +C
Sbjct: 335 QQSHYDALST-LQYSSDGQRIITGADDGKIKVWDMNSGFCIV----TFTQHTSAVSGLCF 389
Query: 493 ESSAKNALLGTEGGNIYSLDL 555
+ G++ + DL
Sbjct: 390 SKRGNVLFSSSLDGSVRAWDL 410
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 339 DYRFVIGVLAVEFDAWSAVDLERSGGGTKR 250
D+ F++ +L F WS VD+E SG +KR
Sbjct: 62 DWIFLVDIL--NFSFWSDVDVEDSGKHSKR 89
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +1
Query: 289 RPGVELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKN 468
RP +G N +V ++I + R D++ +W ++ S E HV G
Sbjct: 294 RPLKVYFGHTDNVLGVVVSENYIISSSR------DHTARVWRLDATSPAEACMHVLRGHL 347
Query: 469 KKISAICVESSAKNALLGT 525
+++ V+ S+K L+ T
Sbjct: 348 ASVNS--VQYSSKTGLIVT 364
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 316 HTNYESIVTQIHFITGTGRLISLCDDNSLHLWEI 417
H N E +VT + +T + R I++ D +L +W +
Sbjct: 492 HGNLE-VVTALKMMTSSNRFITVGTDATLRIWAL 524
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/76 (18%), Positives = 30/76 (39%)
Frame = +1
Query: 325 YESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSA 504
+E V F+ T L++ C D + W++ L+ + G + I + +
Sbjct: 325 HEQAVIDCKFLPNTPYLLTACADCVIRKWDVRSGQLL----GEYTGHQEPILCMAITPDG 380
Query: 505 KNALLGTEGGNIYSLD 552
K + G++ + D
Sbjct: 381 KRVVTGSDDTELLVFD 396
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 6.6
Identities = 7/24 (29%), Positives = 18/24 (75%)
Frame = +1
Query: 364 TGRLISLCDDNSLHLWEINEKSLV 435
+GRL + +DN++ +W+++ +L+
Sbjct: 189 SGRLYTASEDNTIRIWDVSTGNLL 212
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 100 MLKFIRGKGQQPSAERQKLQNELFAFRKTVQ 192
+LK + + +Q ERQK+Q E+ +RK+ Q
Sbjct: 892 LLKEKQERERQLQEERQKMQEEVLEWRKSQQ 922
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 233 GSHASADALCGKPCWTVFRNAN 168
GS S D + G+ W++F NAN
Sbjct: 92 GSLHSYDRITGQELWSLFTNAN 113
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 558 RFHDLGRCHIPGCRYAEL 611
R+ LG+C+ P CRY +
Sbjct: 265 RYFLLGKCNNPNCRYVHI 282
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 8.7
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Frame = +2
Query: 116 AARASSPLLRGRSCRMNY--LHSERQS-----SMASRTERQHSRG-IRSS--DSRRL--- 256
A R+SS RG S R N H + S + R+ + G +RSS D+RR
Sbjct: 255 ADRSSSYSRRGDSYRSNRSRAHDDDDEDDYSFSRSKSLSRKTAGGSLRSSKMDNRRSKYA 314
Query: 257 -VPPPERSRSTADQASNSTANTPITNR*SHRYISSQGQ 367
P P RSRS +D+ S ++ ++ S ++ S +
Sbjct: 315 DTPSPRRSRSYSDEDEESVYSSDVSTESSSQFSSRSSE 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,240
Number of Sequences: 5004
Number of extensions: 47635
Number of successful extensions: 184
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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