Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e07f
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)                     117   7e-27
SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                32   0.42 
SB_10606| Best HMM Match : I-set (HMM E-Value=0)                       30   1.3  
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   2.3  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          29   2.3  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2)                    29   4.0  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             29   4.0  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)              28   5.2  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  28   6.9  
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)               28   6.9  
SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)                 27   9.1  
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)
          Length = 1582

 Score =  117 bits (282), Expect = 7e-27
 Identities = 58/116 (50%), Positives = 80/116 (68%), Gaps = 7/116 (6%)
 Frame = +1

Query: 283 YGRPGVELYGQHTNYESIVTQIHFITGTGRLISLCDD---NSLHLWEINEKS----LVEL 441
           +GRPGV+L   H N ++ + ++HF+   GR+IS+CDD   NS+HLWE+N+K     L E+
Sbjct: 430 FGRPGVQLTACHDN-QTRIQELHFLPEQGRVISVCDDGEQNSIHLWEVNKKDGKSVLEEV 488

Query: 442 KSHVFEGKNKKISAICVESSAKNALLGTEGGNIYSLDLSAFTISEDVIYQDVVMQN 609
           K+   EG+ KKIS  C+       LLGTEGGNIY LD+++F + E VIYQDVVMQ+
Sbjct: 489 KTCTLEGRLKKISVCCLSMKTNRLLLGTEGGNIYLLDINSFELQEYVIYQDVVMQS 544


>SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/69 (27%), Positives = 41/69 (59%)
 Frame = +1

Query: 367 GRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNIYS 546
           G LIS C ++ +HLW + ++  V ++S  F    ++I+ + +   ++   +GTE GN++ 
Sbjct: 1   GALISNCPEDCIHLWNLRQEQPVIVQSLRF--NRERITCLHLPYKSRWLYVGTEKGNVHV 58

Query: 547 LDLSAFTIS 573
           +++  F +S
Sbjct: 59  VNIEKFELS 67


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +2

Query: 152  SCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITN 331
            SC   +   +R S ++ R    +S G  S  S    P P +SR+ + + S S A+T    
Sbjct: 1435 SCNSVHASRDRGSCLSVRDRNSYSSGHASDSSFSESPGPRQSRNRSLKRSKSAASTRSET 1494

Query: 332  R*SHRYISSQG 364
              S  Y S +G
Sbjct: 1495 ASSSGYESMRG 1505


>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
          Length = 872

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
 Frame = +2

Query: 62  TKTSQTVVSGQAEC*SLYAA---RASSPLLRGR-SCRMNYLHSERQSSMASRTERQHSRG 229
           TK  Q +VSG     +   +   + +SP+ RGR +C     H E + S    T       
Sbjct: 597 TKDGQVLVSGPRHVINKDGSIVIQKASPVDRGRYTCTARNSHGEDRVSSTLNTMDPVVPK 656

Query: 230 IRSSDSRRLVPPPERSRSTADQASNSTANT 319
           I S D  R + P  RSR       N TA T
Sbjct: 657 ILSPDDPRTIHPDHRSRVHGTIGDNITALT 686


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 149 RSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPIT 328
           +S +++YL      ++ S+ ERQ +R      +   V  P ++  T+  +SNS A T   
Sbjct: 429 QSEKLDYLRCNWVDTLQSKIERQETRYKGGRITHNFVSSPRQAAYTSGLSSNSIAQTITV 488

Query: 329 N 331
           N
Sbjct: 489 N 489


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/88 (25%), Positives = 36/88 (40%)
 Frame = +2

Query: 110 LYAARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTA 289
           ++    +S  +RG S         R++    R ER  S G+R    ++          T 
Sbjct: 93  VWVPATNSQNIRGTSFLPPIESRSRKTGNVDRPERSLSAGVRDIPQKQSTESKNIPGPTN 152

Query: 290 DQASNSTANTPITNR*SHRYISSQGQAV 373
             +S+S   T  TN  S R I + GQ++
Sbjct: 153 SISSDSRRITKTTNSNSTRLIRTPGQSI 180


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 25/91 (27%), Positives = 41/91 (45%)
 Frame = +2

Query: 50   LDFITKTSQTVVSGQAEC*SLYAARASSPLLRGRSCRMNYLHSERQSSMASRTERQHSRG 229
            L+ +TK S T +    EC    A R ++  LR  +   N L+++  +  +  T       
Sbjct: 974  LEIVTKQSATEI----ECDPDVAMRLAT--LRSEASFENTLNNQANAGPSEETS------ 1021

Query: 230  IRSSDSRRLVPPPERSRSTADQASNSTANTP 322
              S+    LVP P +++ T+D  SNS    P
Sbjct: 1022 --SNPKSYLVPAPRKAKPTSDDVSNSVGQRP 1050


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +1

Query: 292  PGVELYGQHTNYESIVTQIHFITGTGRLISLCDDNSLHLWEINEKSLVE-LKSHVFEGKN 468
            P  E       +E  VT + F     RL+S+  D  L +W++   +L++ L  H  +G  
Sbjct: 1252 PSDEFLRSLEGHEDRVTSLAFSKNGKRLVSVALDKKLKVWDVESGNLLDTLTGH--DG-- 1307

Query: 469  KKISAICVESSAKNALLGTEGGNI 540
                  C  +   N ++ T G N+
Sbjct: 1308 --YPVCCAWNPVDNTMVATCGDNL 1329



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
 Frame = +1

Query: 151  KLQNELFAFRKTVQHGFPHRASALAWDPXXXXXXXXXXXXXXKVYGRPGVELYGQHTNYE 330
            +L N    F ++++ G   R ++LA+                KV+      L    T ++
Sbjct: 1248 RLWNPSDEFLRSLE-GHEDRVTSLAFSKNGKRLVSVALDKKLKVWDVESGNLLDTLTGHD 1306

Query: 331  SIVTQIHFITGTGRLISLCDDN-SLHLWEINEKSLVELKSH 450
                   +      +++ C DN  L +W++  KS   LKSH
Sbjct: 1307 GYPVCCAWNPVDNTMVATCGDNLELLIWDLETKSSTRLKSH 1347


>SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2)
          Length = 803

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +2

Query: 50  LDFITKTSQTVVSGQAEC*SLYAARASS--PLLRGRSCRMNYLHSERQSSMASRTERQHS 223
           LD I++  + V+   +        RASS       RS  +N   S  + +  +   R   
Sbjct: 642 LDSISEGKERVIGRSSSFNGRTPRRASSVDSPRNSRSRLLNASSSYERRTQEAGLNRASD 701

Query: 224 RGIRSSDSRRLVPPPERSRSTADQ 295
           R +RS D   +V PPE  +   DQ
Sbjct: 702 RRVRSLDRNEMVSPPELIQLLKDQ 725


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +2

Query: 173 HSERQSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITNR*SHR 346
           H E +S   SRT+R+ SR    S SR    P  RSRS  D  +    +T +++R SH+
Sbjct: 486 HRESRSRSKSRTKRERSRKKSRSRSR----PRSRSRSRGDSLT-GFHSTSLSDR-SHK 537


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 185 QSSMASRTERQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTP 322
           +S MA+  +  ++    S+DS+    P   S+S AD  S   A+TP
Sbjct: 243 ESKMAADMKNSNAESSGSNDSKSTESPLSPSQSDADNTSPLKASTP 288


>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
          Length = 260

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +1

Query: 367 GRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKN 510
           G ++S   D +  +W   +      + H F G    IS++C  +  +N
Sbjct: 27  GSILSASRDRTTRVWVTEDGGRTYSEGHAFAGHKNFISSVCAMAPTEN 74


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +2

Query: 179 ERQSSMASRTE-RQHSRGIRSSDSRRLVPPPERSRSTADQASNSTANTPITN---R*SHR 346
           +R+S   SR+  R H +  + S+SR     P++SRS     S   + +P  +   R S R
Sbjct: 209 KRKSRSRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSRSPRSSKR 268

Query: 347 YISSQ 361
           Y SS+
Sbjct: 269 YRSSR 273


>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +1

Query: 373 LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNIYSLD 552
           LIS  DD  + +W+   K+ V+      EG  + IS +         L G+E G +    
Sbjct: 100 LISGADDRLVKIWDYQNKTCVQ----TLEGHAQNISCVGFHPELPIILTGSEDGTVRVWH 155

Query: 553 LSAFTISEDVIY 588
            + + +   + Y
Sbjct: 156 ANTYRLESTLNY 167


>SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)
          Length = 856

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 127 GPCRV*TSTFCLPRDDSLRSF 65
           GPC+  T  FC+ R D ++SF
Sbjct: 213 GPCQTPTLGFCVERHDQIQSF 233


>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 307 YGQHTNYESIVTQIHFITGTGR-LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISA 483
           Y  H N  + + + +F    G+ +++  DD S  +W+ N  +L+     V +G +  ++ 
Sbjct: 641 YCGHCNTTTDIKEANFFGDNGQYIVAGSDDGSFFMWDRNTTNLI----RVLKGDDSIVN- 695

Query: 484 ICVESSAKNALLGTEG 531
            C++      +L T G
Sbjct: 696 -CLQPHPSVCILATSG 710


>SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 345 LCDYRFVIGVLAVEFDAWSAVDLERS 268
           LC+Y F++      F  W A+D+ RS
Sbjct: 715 LCNYEFIMEAKMKPFRKWQALDMTRS 740


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,012,644
Number of Sequences: 59808
Number of extensions: 368206
Number of successful extensions: 1166
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)