Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e06r
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.55
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 29 0.73
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.97
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 5.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.8
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 26 6.8
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 6.8
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 25 9.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 9.0
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.55
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 4/145 (2%)
Frame = -2
Query: 623 YDNRGQPVAVAPANDSSPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTK 444
Y + + +P+ + S S ++ + T T A+ I + +SF +T+
Sbjct: 189 YTSASSTILSSPSVEQS--TPSIITQTESSTTTEGSSVASSESTIANSDQSSFITYESTQ 246
Query: 443 NINSNNNGQDGTKCIVTVITKTAKEYMTTI-PCSVLLNTAAENNV-TEAP--IVENEKVE 276
N +N T + +A Y+TT+ + T +EN T P N +
Sbjct: 247 NPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQ 306
Query: 275 IDTINSTTSPFSDDPNQAVALKLTT 201
I + S++S + P+ A++ TT
Sbjct: 307 ISSTISSSSFIVESPSVALSTSSTT 331
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 29.1 bits (62), Expect = 0.73
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 608 QPVAVAPANDSSPANDSFLSDLVNCTLTISGEKATEVLAI 489
QP + N SSP + LS L NCT + K + V I
Sbjct: 134 QPGDILAVNHSSPLDVLVLSCLYNCTFAVCDSKTSNVSII 173
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 28.7 bits (61), Expect = 0.97
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = -2
Query: 581 DSSPANDSFLSDLVNCTLTISGEK-ATEVLAIPCAIATSFSPDANTKNINSNNNGQDGTK 405
DS+ SF SD + EK A++V + IATS S D KNI N + K
Sbjct: 23 DSTDTESSF-SDADSSEEEFVEEKEASQVQSTKSKIATSESEDVTLKNIAKKNKRERNDK 81
Query: 404 CIVTVITKT---AKEYMTTIPCSVLLNTAAENNVTEA 303
I ++ K +T + N AE+N + A
Sbjct: 82 LIPQQSNESEAIEKPVQSTTEVELKTNELAESNSSVA 118
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 358 VVIYSFAVFVITVTIHFVPSCPLLFEFIF 444
V +Y+ + I +++PSCP L++ F
Sbjct: 285 VALYTNLLLAIVFVYNYLPSCPSLYDLFF 313
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 335 NTAAENNVTEAPIVENEKVEIDTINSTTSPFSDDPNQAV 219
NTAAE+ + + E V T+ S+ + +PN+ +
Sbjct: 445 NTAAESLINQEETTSGEAVTKSTVESSANEEEAEPNEII 483
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -2
Query: 578 SSPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKNINSN 429
+SPA+ SF++ LV+ + S + + + A TS S + T + +S+
Sbjct: 72 TSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSH 121
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 6.8
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -2
Query: 668 WNLARSTGNRHHTVIYDNRGQPVAVAPANDSSP-ANDSFLSDLVNCTLTISGEKATEVLA 492
W + R + ++ DN GQ V + +N D+++ DL+ C I+ + +
Sbjct: 288 WQVGRLAAVNSNFLVLDNNGQRVKILYSNSQKHYFKDTYIGDLL-CISPIN-HSSDNLSD 345
Query: 491 IPCAIATSFSPDANTKNINSNN 426
C T+ +N +N S+N
Sbjct: 346 YSCVSDTTTEILSNLENPLSSN 367
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 693 SYPGSCNPXTCKRTSCATNPPTL 761
S P S P C T C +NPP L
Sbjct: 209 SSPTSYPPPLCPATYCPSNPPQL 231
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 401 IVTVITKTAKEYMTTIPCSVLLN 333
++T + TA YM P S LLN
Sbjct: 353 LITTVAVTASRYMNVFPLSNLLN 375
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 9.0
Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = -2
Query: 455 ANTKNINSNNNGQDGTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEAPI-VENEKV 279
ANT+++N+++ G D K +I+ + K + +IP + + + + +++T+ + N V
Sbjct: 335 ANTESVNASDEGSD--KSQKGIISDSPK--LLSIPLNNVPSKSLNDDITQDELNSSNADV 390
Query: 278 EIDTINSTTSPFSDDPNQAVALKLTTEGN 192
+ + I +T+ + NQ + + GN
Sbjct: 391 DEEVIETTSLEEKNVDNQEFVTSI-SNGN 418
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 9.0
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Frame = -2
Query: 503 EVLAIPCAIATSFSPDANTKNINSNNNGQDGTKCIVTVIT------KTAKEYMTTIPCSV 342
E IP + T+ +P T I T + +IT T E TTI
Sbjct: 97 ETTTIP-TVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155
Query: 341 LLNTAAENNVTEAPIVENEKVEIDTINSTTSP 246
+ T E T P+VE I T+ + T+P
Sbjct: 156 AMTTPMEETTTTTPMVET--TTIPTVETMTTP 185
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 421 PLLFEFIFLVLASGENDVAIAHGIASTSVAFSPLIVKVQLTKSDKNESFAGEE 579
P +F F + G+N + + I + S S + L KSD+N SF E+
Sbjct: 117 PEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSFTDED 169
>SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 81
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 509 ATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
A +A+ A S +P NT N NG +GT
Sbjct: 10 AIVTMALAVQAANSTAPYGNTTNSTGTTNGTNGT 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,952
Number of Sequences: 5004
Number of extensions: 59727
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -