Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e06r
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 34 0.11
12_01_0058 - 493758-494114 32 0.44
04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420 31 1.3
03_06_0632 + 35196608-35197087,35198205-35198424,35198521-35198807 31 1.3
01_01_0381 - 2961422-2963917 29 4.1
12_02_0349 - 17820352-17821238,17822976-17823363 28 7.1
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987... 28 7.1
11_04_0462 - 17970780-17970806,17970849-17971049,17971151-179712... 28 7.1
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 28 7.1
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 639 AISSRSSQVPEC*SSKKSSYPGSCNPXTCKRTSCATNPP 755
A+S SS EC SS ++S+ G P C SCA N P
Sbjct: 7 AVSGSSSSSLECVSSCRTSWRGGGRPYECSVLSCAWNAP 45
>12_01_0058 - 493758-494114
Length = 118
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 615 VIINNGVMAISSRSSQVPEC*SSKKSSYPGSCNPXTCKRTSCATNPPTLY 764
V+I V+++ + C S + YPGSC P + C T+P LY
Sbjct: 36 VVITAIVVSLEAPEDVPHGCSSIVSALYPGSCRPEAIAYSCCFTSPLELY 85
>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
Length = 1407
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 300 RCLSNIIFCCRI*QYGTWDSRHILLCCLC 386
+C+ +I RI +YG D LLCCLC
Sbjct: 768 QCVEGLISVARIARYGLEDVLDELLCCLC 796
>03_06_0632 + 35196608-35197087,35198205-35198424,35198521-35198807
Length = 328
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 457 SGENDVAIAHGIASTSVAFSPLIVKVQLTKSDKNESFAGEESFAGATATGCP 612
S + A+AHG S + F P+++ V SD + F+GE+ GA P
Sbjct: 74 SSSPENALAHGYISWKLDFPPVLILVASCPSD-HVGFSGEQPIQGARIQVAP 124
>01_01_0381 - 2961422-2963917
Length = 831
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 587 ANDSSPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKNINSNNN 423
AN P D+ +D + LTISG+ V P + ++S + + KN SN+N
Sbjct: 82 ANGGEPIMDA--ADAGSPELTISGDDGDLVALHPTTKSIAWSTNVSAKNSTSNSN 134
>12_02_0349 - 17820352-17821238,17822976-17823363
Length = 424
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 251 SPFSDDPNQAVALKLTTEGNYGG 183
S FS P+ A LKL TEGN GG
Sbjct: 327 SVFSSSPDLANLLKLYTEGNGGG 349
>11_06_0249 +
21697863-21697923,21698119-21698128,21698160-21698766,
21699011-21699090,21699182-21699263,21699357-21699428,
21700128-21700406
Length = 396
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = -2
Query: 575 SPANDSFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPD-ANTKNINSNNNGQ--DGTK 405
SP ++ SD + T ++A + AT PD +N K N NG K
Sbjct: 156 SPMAETAGSDSTSVTSMEDVQEAKDAAPSETDDATGHPPDLSNDKACAGNGNGNVFQNAK 215
Query: 404 CIVTVITKTAK 372
C++T TK K
Sbjct: 216 CVLTTSTKKMK 226
>11_04_0462 -
17970780-17970806,17970849-17971049,17971151-17971293,
17971294-17971363,17971455-17971535,17971644-17971784,
17972349-17972453,17972619-17972669
Length = 272
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 560 SFLSDLVNCTLTISGEKATEVLAIPCAIATSFSPD--ANTKNINSNNN 423
S L DL+ C + +S ++ATE + C I S S + A+ + NN+
Sbjct: 107 SLLHDLIPCLVCLSAKRATET-ELVCFILKSISDNRIAHVSHFGGNNH 153
>01_07_0084 +
40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 199 KETMEVSARITLTVHQNTVLFEIQSIRVLLLIRISQ 92
KET E+SA +TV Q F Q RV +R+S+
Sbjct: 101 KETREISASFGVTVTQVREFFASQRTRVRKFVRLSR 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,485,266
Number of Sequences: 37544
Number of extensions: 349747
Number of successful extensions: 1025
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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