Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e06r
(768 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002931-1|AAH02931.1| 744|Homo sapiens CCR4-NOT transcription ... 31 6.0
BC002928-1|AAH02928.1| 717|Homo sapiens CNOT10 protein protein. 31 6.0
AK023227-1|BAB14478.1| 744|Homo sapiens protein ( Homo sapiens ... 31 6.0
AK022952-1|BAB14327.1| 744|Homo sapiens protein ( Homo sapiens ... 31 6.0
AK022576-1|BAB14108.1| 743|Homo sapiens protein ( Homo sapiens ... 31 6.0
AK021695-1|BAB13876.1| 595|Homo sapiens protein ( Homo sapiens ... 31 6.0
BC125049-1|AAI25050.1| 401|Homo sapiens keratin associated prot... 30 7.9
BC125048-1|AAI25049.1| 401|Homo sapiens keratin associated prot... 30 7.9
AL160037-1|CAH72024.1| 1371|Homo sapiens leucine rich repeat con... 30 7.9
AL024509-3|CAI21665.1| 1371|Homo sapiens leucine rich repeat con... 30 7.9
AL022170-1|CAI21583.1| 1371|Homo sapiens leucine rich repeat con... 30 7.9
AF430017-1|AAL89737.1| 1029|Homo sapiens intestinal membrane muc... 30 7.9
AF016692-1|AAB71685.1| 648|Homo sapiens small intestinal mucin ... 30 7.9
AB076351-1|BAD01538.1| 401|Homo sapiens keratin associated prot... 30 7.9
>BC002931-1|AAH02931.1| 744|Homo sapiens CCR4-NOT transcription
complex, subunit 10 protein.
Length = 744
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 161 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 201
>BC002928-1|AAH02928.1| 717|Homo sapiens CNOT10 protein protein.
Length = 717
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 161 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 201
>AK023227-1|BAB14478.1| 744|Homo sapiens protein ( Homo sapiens
cDNA FLJ13165 fis, clone NT2RP3003686. ).
Length = 744
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 161 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 201
>AK022952-1|BAB14327.1| 744|Homo sapiens protein ( Homo sapiens
cDNA FLJ12890 fis, clone NT2RP2004124. ).
Length = 744
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 161 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 201
>AK022576-1|BAB14108.1| 743|Homo sapiens protein ( Homo sapiens
cDNA FLJ12514 fis, clone NT2RM2001768. ).
Length = 743
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 160 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 200
>AK021695-1|BAB13876.1| 595|Homo sapiens protein ( Homo sapiens
cDNA FLJ11633 fis, clone HEMBA1004274. ).
Length = 595
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 530 LTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQDGT 408
LT EKA +LA+ + + + + N KN NNN +DG+
Sbjct: 61 LTYQAEKALHLLAVLEKMISQGNNNKNGKNETGNNNNKDGS 101
>BC125049-1|AAI25050.1| 401|Homo sapiens keratin associated protein
10-4 protein.
Length = 401
Score = 30.3 bits (65), Expect = 7.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 597 CNRLSSVIINNGVMAIS-SRSSQVPEC*SSKKSSYPGSCNPXTCKRTSC 740
C + SV I +G ++ +SS P C +S +S G C P CK SC
Sbjct: 281 CKPVGSVPICSGASSLCCQQSSCQPACCTSSQSQQ-GCCVPVCCKPVSC 328
>BC125048-1|AAI25049.1| 401|Homo sapiens keratin associated protein
10-4 protein.
Length = 401
Score = 30.3 bits (65), Expect = 7.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 597 CNRLSSVIINNGVMAIS-SRSSQVPEC*SSKKSSYPGSCNPXTCKRTSC 740
C + SV I +G ++ +SS P C +S +S G C P CK SC
Sbjct: 281 CKPVGSVPICSGASSLCCQQSSCQPACCTSSQSQQ-GCCVPVCCKPVSC 328
>AL160037-1|CAH72024.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 30.3 bits (65), Expect = 7.9
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 266 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVI 87
IN + + S +P +A+ L L N G+S + NC G + + C A N+T +
Sbjct: 429 INLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQ-VLEGCIAEIHNITSL 487
Query: 86 PIS 78
IS
Sbjct: 488 DIS 490
>AL024509-3|CAI21665.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 30.3 bits (65), Expect = 7.9
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 266 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVI 87
IN + + S +P +A+ L L N G+S + NC G + + C A N+T +
Sbjct: 429 INLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQ-VLEGCIAEIHNITSL 487
Query: 86 PIS 78
IS
Sbjct: 488 DIS 490
>AL022170-1|CAI21583.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 30.3 bits (65), Expect = 7.9
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 266 INSTTSPFSDDPNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVI 87
IN + + S +P +A+ L L N G+S + NC G + + C A N+T +
Sbjct: 429 INLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQ-VLEGCIAEIHNITSL 487
Query: 86 PIS 78
IS
Sbjct: 488 DIS 490
>AF430017-1|AAL89737.1| 1029|Homo sapiens intestinal membrane mucin
MUC17 protein.
Length = 1029
Score = 30.3 bits (65), Expect = 7.9
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 1/177 (0%)
Frame = -2
Query: 590 PANDSSPANDS-FLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQD 414
P +SSP N S +++ + + +GE +T + +P + S +A+T + ++
Sbjct: 24 PVTNSSPTNSSPTTAEVTSMPTSTAGEGSTPLTNMPVSTTPVASSEASTLSTTPVDSNT- 82
Query: 413 GTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEAPIVENEKVEIDTINSTTSPFSDD 234
VT ++ + T ++ ++T +E + + ++ + + ST S S D
Sbjct: 83 ----FVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSSTYVTSSEASTPSTPSVD 138
Query: 233 PNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVIPISTTLAT 63
+ V TT +Q+N TP I P++ V+ LT++P+STT T
Sbjct: 139 RSTPV----TTS------TQSNSTPTPPE-VITLPMSTPSEVSTPLTIMPVSTTSVT 184
>AF016692-1|AAB71685.1| 648|Homo sapiens small intestinal mucin
MUC3 protein.
Length = 648
Score = 30.3 bits (65), Expect = 7.9
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 1/177 (0%)
Frame = -2
Query: 590 PANDSSPANDS-FLSDLVNCTLTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQD 414
P +SSP N S +++ + + +GE +T + +P + S +A+T + ++
Sbjct: 24 PVTNSSPTNSSPTTAEVTSMPTSTAGEGSTPLTNMPVSTTPVASSEASTLSTTPVDSNT- 82
Query: 413 GTKCIVTVITKTAKEYMTTIPCSVLLNTAAENNVTEAPIVENEKVEIDTINSTTSPFSDD 234
VT ++ + T ++ ++T +E + + ++ + + ST S S D
Sbjct: 83 ----FVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSSTYVTSSEASTPSTPSVD 138
Query: 233 PNQAVALKLTTEGNYGGISQNNLNCTPEHGSIRDPINPCFAVNQNLTVIPISTTLAT 63
+ V TT +Q+N TP I P++ V+ LT++P+STT T
Sbjct: 139 RSTPV----TTS------TQSNSTPTPPE-VITLPMSTPSEVSTPLTIMPVSTTSVT 184
>AB076351-1|BAD01538.1| 401|Homo sapiens keratin associated protein
protein.
Length = 401
Score = 30.3 bits (65), Expect = 7.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 597 CNRLSSVIINNGVMAIS-SRSSQVPEC*SSKKSSYPGSCNPXTCKRTSC 740
C + SV I +G ++ +SS P C +S +S G C P CK SC
Sbjct: 281 CKPVGSVPICSGASSLCCQQSSCQPACCTSSQSQQ-GCCVPVCCKPVSC 328
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,091,549
Number of Sequences: 237096
Number of extensions: 2019730
Number of successful extensions: 4255
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4255
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -