Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e06r
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   7.2  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 450 YQKYKFEQQWTRRYEMYRNCYNKD 379
           Y+ YK    +   Y+M++  YNKD
Sbjct: 419 YRIYKRIIDYYHSYKMHQKPYNKD 442


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 450 YQKYKFEQQWTRRYEMYRNCYNKD 379
           Y+ YK    +   Y+M++  YNKD
Sbjct: 419 YRIYKRIIDYYHSYKMHQKPYNKD 442


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 536 CTLTISGEKATEVLAIPCAIATSFSPDANTKNINSNNNGQD 414
           CT   +G    E        +T  + +ANT   N+NNN  +
Sbjct: 206 CTEATAGAVVLETCQRNSNNSTITAGNANTNASNNNNNNNN 246


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 708 RSRGRNSSYWISTLELGSIYWKS 640
           R+RG N  Y    L+ G+  W S
Sbjct: 47  RTRGGNKKYRALRLDTGNFSWGS 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,565
Number of Sequences: 438
Number of extensions: 5047
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)