Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e06f
         (632 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6FH79 Cluster: Na+/H+ antiporter; n=1; Moritella sp. P...    35   1.4  
UniRef50_Q2JMF8 Cluster: Single-stranded-DNA-specific exonucleas...    34   3.3  
UniRef50_Q53D41 Cluster: JM29; n=3; Cercopithecine herpesvirus 1...    33   4.3  
UniRef50_A4FEW5 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_Q0JL00 Cluster: Os01g0636100 protein; n=1; Oryza sativa...    33   5.7  
UniRef50_Q6H236 Cluster: Paternally-expressed gene 3 protein; n=...    32   10.0 

>UniRef50_A6FH79 Cluster: Na+/H+ antiporter; n=1; Moritella sp.
           PE36|Rep: Na+/H+ antiporter - Moritella sp. PE36
          Length = 403

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 485 MTLLIICSSLLGVRILRSIISLNSFLILGWLFWLAV 378
           ++L   C S+L +    +I++L  +LI+GWL W+AV
Sbjct: 184 LSLACACISILWLLHRNNIMTLTPYLIIGWLLWVAV 219


>UniRef50_Q2JMF8 Cluster: Single-stranded-DNA-specific exonuclease
           RecJ; n=2; Synechococcus|Rep:
           Single-stranded-DNA-specific exonuclease RecJ -
           Synechococcus sp. (strain JA-2-3B'a(2-13))
           (Cyanobacteria bacteriumYellowstone B-Prime)
          Length = 758

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = +1

Query: 115 CAYSFVLSVKRFQAVEVRVEDQVRELATSLNQPQHLLVILSRQRISRHYPDGRKNQLQIL 294
           C  +  L+++R  A  V  + Q R LA  +     LLV   R  ++    D    QLQ+L
Sbjct: 432 CLAAVQLALQRELAARVSPDQQARALAVEIILDWELLVSQDRDGVAEL--DEVYRQLQLL 489

Query: 295 KAFLRGNPN 321
           + F  GNPN
Sbjct: 490 QPFGHGNPN 498


>UniRef50_Q53D41 Cluster: JM29; n=3; Cercopithecine herpesvirus
           17|Rep: JM29 - Macaca fuscata rhadinovirus
          Length = 536

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
 Frame = +3

Query: 183 KRTSYKPQPAPTSFSYPQSAAHKPSLSGW-QEKPATNTXXXXXXXXXXXXXXXXXXYP-- 353
           K T  +PQP P  FS+PQ+ A  P L+   Q  P T+T                   P  
Sbjct: 400 KDTDQRPQPPPVQFSWPQTYASAPYLAYQPQWYPGTDTHLHASQPYQIAQGIQQTQPPPP 459

Query: 354 ---SSQTGLSGNSQPKQP-PKYQETVQRNNAP 437
              S   GL+  +QP  P P  QE+   N  P
Sbjct: 460 QPASHHAGLA--TQPVAPAPAAQESAMSNAVP 489


>UniRef50_A4FEW5 Cluster: Putative uncharacterized protein; n=1;
           Saccharopolyspora erythraea NRRL 2338|Rep: Putative
           uncharacterized protein - Saccharopolyspora erythraea
           (strain NRRL 23338)
          Length = 205

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = +3

Query: 225 SYPQSAAHKPSLSGWQEKPATNTXXXXXXXXXXXXXXXXXXYPSSQTGLSGNSQPKQPPK 404
           S P++A      SG  E+PAT                     P+  +  SG +QP +P +
Sbjct: 72  STPEAAPTPSQRSGRTEEPATGADEPTTSRPTATSKPSTTTQPAQTSAPSGTTQPSEPTQ 131

Query: 405 YQETVQ 422
             ET Q
Sbjct: 132 PSETSQ 137


>UniRef50_Q0JL00 Cluster: Os01g0636100 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os01g0636100 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 150

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 21/75 (28%), Positives = 25/75 (33%)
 Frame = +3

Query: 213 PTSFSYPQSAAHKPSLSGWQEKPATNTXXXXXXXXXXXXXXXXXXYPSSQTGLSGNSQPK 392
           P S  YP S+   P  S W+ +P+                      PSS   LS   QP 
Sbjct: 25  PPSGCYPSSSLPSPCASSWRHRPSAQQKLAALLRAGSSRRCN----PSSSFPLSMRQQPT 80

Query: 393 QPPKYQETVQRNNAP 437
           QPP          AP
Sbjct: 81  QPPFLTAAADATAAP 95


>UniRef50_Q6H236 Cluster: Paternally-expressed gene 3 protein; n=6;
            Eutheria|Rep: Paternally-expressed gene 3 protein - Bos
            taurus (Bovine)
          Length = 2387

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
 Frame = +3

Query: 186  RTSYKPQPAPTSFSYPQ---SAAHKPSLSGWQEKPATNTXXXXXXXXXXXXXXXXXXYPS 356
            +TSY  +PA TS++      S A +P+ + + E+PA  +                  YP 
Sbjct: 1507 QTSYPEEPAQTSYAEEPAQTSYAEEPAQTSYPEEPAQTSYTEEPAQTSYAKEPAQTSYPE 1566

Query: 357  SQTGLSGNSQPKQPPKYQETVQRNNA 434
                 S   +P Q    +E  Q + A
Sbjct: 1567 EPAQTSYAEEPAQTSYAEEPAQTSYA 1592


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,936,898
Number of Sequences: 1657284
Number of extensions: 10448829
Number of successful extensions: 29109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29091
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)