Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e06f
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0904 + 20717005-20718087                                         29   2.3  
06_01_0159 + 1193479-1194435,1194509-1194652,1194735-1194821,119...    29   3.1  
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    29   3.1  
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70...    29   3.1  
09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429     28   5.4  
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559     28   5.4  
11_03_0068 + 9564354-9565180,9566658-9568704                           28   7.1  
11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614           28   7.1  
04_04_1421 - 33449539-33449994                                         28   7.1  

>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 192 SYKPQPAPTSFSYPQSAAHKPSLSGWQEKP 281
           +YKPQP PT    P     KP+ S +  KP
Sbjct: 301 TYKPQPKPTPTPTPYKPQPKPTPSPYTPKP 330


>06_01_0159 +
           1193479-1194435,1194509-1194652,1194735-1194821,
           1194910-1195244,1195600-1195840,1195921-1195995,
           1196072-1196157,1196591-1196663,1196805-1197535,
           1197613-1197784,1197862-1197948,1198255-1198344,
           1198439-1198549
          Length = 1062

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 388 QNNHPSIKKLFKEIMLLSIRTPNKLEQIISR 480
           + NH SI +++++IM    + P+K+E ++ R
Sbjct: 478 KQNHSSIVEMYEKIMKTQSQMPSKMESLVDR 508


>01_01_0090 +
           706340-707296,707370-707513,707596-707682,707771-708105,
           708462-708702,708783-708857,708932-709017,709451-709523,
           709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 388 QNNHPSIKKLFKEIMLLSIRTPNKLEQIISR 480
           + NH SI +++++IM    + P+K+E ++ R
Sbjct: 478 KQNHSSIVEMYEKIMKTQSQMPSKMESLVDR 508


>01_01_0089 -
           699533-699643,699738-700046,700134-700220,700298-700469,
           700547-701373,701487-701559,701993-702078,702153-702227,
           702308-702548,702905-703239,703328-703414,703497-703640,
           703714-704670
          Length = 1167

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 388 QNNHPSIKKLFKEIMLLSIRTPNKLEQIISR 480
           + NH SI +++++IM    + P+K+E ++ R
Sbjct: 478 KQNHSSIVEMYEKIMKTQSQMPSKMESLVDR 508


>09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429
          Length = 541

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 379 TASQNNHPSIKKLFKEIMLLSIRTPNK 459
           TA +++ P IKK+FK+++L   +T NK
Sbjct: 133 TARRDSAPDIKKVFKDMLLELDKTKNK 159


>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
          Length = 789

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 201 PQPAPTSFSYPQSAAHKPSL 260
           P PAP S + PQ+A H+P L
Sbjct: 11  PPPAPESPTAPQTAVHRPDL 30


>11_03_0068 + 9564354-9565180,9566658-9568704
          Length = 957

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 367 DCQGTASQNNHPSIKKLFKEIML 435
           DCQ   S +  P I+K+FK I++
Sbjct: 224 DCQAFVSVSQKPDIRKIFKNILI 246


>11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614
          Length = 266

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 367 DCQGTASQNNHPSIKKLFKEIML 435
           DCQ   S +  P I+K+FK I++
Sbjct: 209 DCQAFVSVSQKPDIRKIFKNILI 231


>04_04_1421 - 33449539-33449994
          Length = 151

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 YKPQPAPTSFSYPQSAAHKPSLSGW 269
           Y  QP P  ++YP + A +P  SG+
Sbjct: 80  YPAQPPPAGYAYPAANAGRPGRSGF 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,476,864
Number of Sequences: 37544
Number of extensions: 277777
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)