Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e06f
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30321| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  

>SB_30321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 530 STRTTGKTGIGRWVRMTLLIICSSLLGVRILRSIISLN 417
           +TR   KT   RWV   L +IC+ L+ V +L   + LN
Sbjct: 30  ATRWRRKTMCARWVIAVLTLICTGLIVVLLLTFELQLN 67


>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
 Frame = +3

Query: 207 PAPTSFSYPQSAAHKPSLSGWQEKPATNTXXXXXXXXXXXXXXXXXXYPSSQTGLSGNSQ 386
           P P+   YP            Q++P +                     P S+ G++G S+
Sbjct: 117 PPPSMAPYPPGPNQGTPPPSTQQQPGSGGYPMMYPQQPGYYPAGTAPPPYSEAGVAGTSE 176

Query: 387 P-KQPPKYQETVQ 422
           P   PPKY++ V+
Sbjct: 177 PLPPPPKYEDVVK 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,086,494
Number of Sequences: 59808
Number of extensions: 325630
Number of successful extensions: 844
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)