Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e05f
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0639 + 30772804-30772904,30773386-30775675                       27   6.5  
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074...    27   8.6  

>01_06_0639 + 30772804-30772904,30773386-30775675
          Length = 796

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 148 RQDNDNIGVEGYNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTY 315
           R+  +N GV GY TG+   +G     +G   N     +A + R ++ Y GP G +Y
Sbjct: 221 RRQGNNSGVSGYGTGHH-YHGSDTYRSGY--NTQNNQQAYDSR-QYGY-GPSGQSY 271


>07_03_0631 +
           20104332-20106802,20106904-20107030,20107352-20107479,
           20108771-20109083
          Length = 1012

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 342 TLVSDVGHSVSNSVRADVRKFSADLKSFVFSANVLQLTGFLSLDSVGGFIAG 187
           T  S+V H++   +   + K    + S +   +   LT   SL+S+G  IAG
Sbjct: 293 TTRSEVTHAIPGGIVITLDKIPTSVLSMILKHHAFGLTRKDSLESIGDKIAG 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,607,805
Number of Sequences: 37544
Number of extensions: 183140
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)