Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e05f
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)                29   2.2  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    29   2.9  
SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)               28   5.0  

>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
          Length = 620

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 309 NSVRADVRKFSADLKSFVFSANVLQLTGFL 220
           NS RADV  F AD+ SF     VL++T  +
Sbjct: 549 NSFRADVNNFRADITSFRADIIVLEVTSLV 578


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 151 QDNDNIGVEGYNTGYETSNGIKAQETG 231
           +D++++G E  N GYE  NG+   + G
Sbjct: 31  EDDNSVGDEDDNVGYEGDNGVGGDDNG 57


>SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
          Length = 1108

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 501 LKRMYCHQDRITDRLDSNNKR--KLFK*MSIFGLDAGACSVDLSL 373
           LK   C +  + +  D  NKR   +   MS   +D G CS D+++
Sbjct: 476 LKHFKCSRQELVENADRINKRCEGMVLVMSAIDVDGGGCSADVAV 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,443,559
Number of Sequences: 59808
Number of extensions: 212615
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)