Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e04r
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.5  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   6.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   6.0  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   7.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 399 QSAAGRPAPGTAADASSPRSLPE 331
           +  A  P PG     SSPRS+ E
Sbjct: 49  EEEAASPTPGDVPTPSSPRSISE 71



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 399  QSAAGRPAPGTAADASSPRSLPERSAVG 316
            ++ AG P   +A+ ASS RS   RS  G
Sbjct: 924  ETHAGSPCRNSASPASSDRSGTPRSTNG 951


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = +3

Query: 612 DWRYRVTWMKHCNCSGWIDNSHY 680
           DW Y V W  +C      D  ++
Sbjct: 755 DWNYPVCWQSNCKKGASSDKPNF 777



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 9/23 (39%)
 Frame = +3

Query: 612  DWRYRVTWMKHCNCSGWIDNSHY 680
            DW Y   W   CN     D S +
Sbjct: 1943 DWEYPKCWQVDCNKGPASDKSAF 1965


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 314 NAPPYNPDPRVRS 276
           NAPP  P PRV S
Sbjct: 729 NAPPPPPPPRVES 741


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 116 RSVRRITAALALSTRPSLDQKHPMEYLECS*PVQR 220
           ++++R  AA++ +T PS+  K    + EC+  V R
Sbjct: 89  QNLQRQQAAMSAATDPSVVSKFRAGFSECASEVGR 123


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 355 IIPKILTREIRGWPMLHRT 299
           I PK+ T  +R W   H T
Sbjct: 184 IFPKVATNILRAWLFQHLT 202


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 355 IIPKILTREIRGWPMLHRT 299
           I PK+ T  +R W   H T
Sbjct: 340 IFPKVATNILRAWLFQHLT 358


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 360 DASSPRSLPERSAVGQCSTVQPGSEGA 280
           D +   SLP    V  CS +Q G + A
Sbjct: 368 DPTFDESLPGCHMVDSCSNIQTGEQFA 394


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 360 DASSPRSLPERSAVGQCSTVQPGSEGA 280
           D +   SLP    V  CS +Q G + A
Sbjct: 375 DPTFDESLPGCHMVDSCSNIQTGEQFA 401


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,554
Number of Sequences: 336
Number of extensions: 3399
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)