Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e04r
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    40   4e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    36   0.006
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    28   1.6  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    27   2.8  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   5.0  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   5.0  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    26   6.6  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 17/37 (45%), Positives = 28/37 (75%)
 Frame = -2

Query: 164 KAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKS 54
           KAALI Q++ L+D+QI +LPP+Q+  IL +++ +  S
Sbjct: 380 KAALIAQLMALTDDQINVLPPDQKERILQIRQALPSS 416



 Score = 29.1 bits (62), Expect = 0.70
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPS 630
           +A  +   NPQL+YA+ QA ++ R    +    +L P+
Sbjct: 188 QAAQLFETNPQLSYAVFQAMLMKRYTSESVVADLLIPA 225


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = -2

Query: 176 SDQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQ 66
           ++ ++ ALI Q+L L+ EQI  LPP QR  IL ++ Q
Sbjct: 323 NEGKRMALIQQLLALTPEQINALPPAQRDQILSIRRQ 359



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVD 663
           EAR +L+ NP L YA  QA ++M +VD
Sbjct: 247 EARRLLIANPALPYAAFQAMLLMNLVD 273


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 336 PERSAVGQCSTVQPGSEGAFKRSTKPA 256
           P  S  GQ ST QP S G F +ST+P+
Sbjct: 169 PNTSTFGQFST-QPASAGLFGQSTQPS 194


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 652 QLQCFIQVTLYLQSYYRVINQ-PKRILIYHPI 560
           +L+ F+Q  L +  YY +  Q  K ILI HP+
Sbjct: 89  KLRAFVQTFLAIGGYYSITTQIVKIILITHPV 120


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 381 PAPGTAADASSPRSLPERSAVGQCSTVQPGSEGAF 277
           P+P        P S PE  ++     ++P S+GAF
Sbjct: 566 PSPSPRIHTIVPNSAPEHPSINDYKILKPISKGAF 600


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 393 AAGRPAPGTAADASSP--RSLPERSAVGQCSTVQPGSEGAFKRSTKPAETAT 244
           A G PAPG  A ++SP  +S+P  +  G     QP  E + ++ +     +T
Sbjct: 215 APGMPAPGPTAVSASPSLQSMPPTN--GVIPGAQPSIEASIEKESTSIRNST 264


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 619 LQSYYRVINQPKRILIYHPIHHQH 548
           LQ Y+  ++  K IL+YH IH ++
Sbjct: 407 LQEYHVSVSSEKPILLYHLIHSKN 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,283
Number of Sequences: 5004
Number of extensions: 55519
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)