Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e04r
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546... 38 0.011
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377... 33 0.24
08_02_0785 + 21190002-21190253,21190452-21190523,21191498-211916... 32 0.56
05_03_0244 + 10857139-10857516 31 1.3
05_03_0245 + 10890555-10890962 30 2.2
09_04_0455 + 17728007-17728542,17728697-17728783,17729052-177292... 29 3.0
10_08_0898 + 21424379-21424792,21424974-21425723 29 5.2
08_02_0588 + 19036509-19039235 29 5.2
07_03_1363 - 26022333-26023225,26023319-26023451 29 5.2
09_04_0635 - 19143721-19145165,19145255-19145306 28 6.9
06_03_0344 - 19754868-19754980,19756085-19756162,19756241-19756619 28 6.9
04_04_0534 + 26071227-26071811 28 6.9
03_02_0356 + 7769153-7769285,7769367-7769485,7769821-7770129 28 6.9
11_06_0213 - 21321676-21322069,21322311-21322507,21322818-213234... 28 9.1
10_05_0096 - 9144683-9145270 28 9.1
09_04_0005 + 13612060-13612291,13612381-13612510,13612726-136129... 28 9.1
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137... 28 9.1
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 28 9.1
04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072... 28 9.1
01_06_0901 - 32849722-32849745,32849788-32849856,32850817-328509... 28 9.1
>05_06_0057 +
25253497-25253589,25253722-25253799,25254583-25254621,
25254724-25255263,25255352-25255450,25255614-25255691,
25255961-25256146,25256240-25256365
Length = 412
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = -2
Query: 155 LIMQVLQLSDEQIALLPPEQRASILLLKEQI 63
L+ QVL +S +QI +LPPEQR +L L++ +
Sbjct: 380 LVQQVLSMSPDQINMLPPEQRQQVLQLRDML 410
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 737 RNMLLQNPQLAYALLQAQVIMRIVD-PATA 651
R ML+ NP + AL +AQV++ +V P TA
Sbjct: 42 RRMLVDNPDVTRALFRAQVVLGMVKAPKTA 71
>11_01_0489 +
3776563-3776692,3776995-3777073,3777532-3777840,
3778828-3778898,3778975-3779213,3779306-3779383,
3779734-3780156,3780416-3780661,3780886-3780978,
3781480-3781527
Length = 571
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -2
Query: 191 IPSGASDQEKAALIMQVLQLSDEQIALLPPEQRASIL 81
+P D E +AL+ QVLQL+ EQ++ LP EQ+ +L
Sbjct: 523 VPQLTPDVE-SALLQQVLQLTPEQLSSLPVEQQQQLL 558
>08_02_0785 +
21190002-21190253,21190452-21190523,21191498-21191631,
21191700-21191850,21191938-21192087
Length = 252
Score = 31.9 bits (69), Expect = 0.56
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 559 HHQHNHRYTIIPDRHPTSTTIPVRPWMLIF 470
H + H YT +P HP TTI +R +++
Sbjct: 107 HEPYKHGYTALPRAHPDETTIDIRQASILY 136
>05_03_0244 + 10857139-10857516
Length = 125
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 211 CAALGMPGGICCGGFC 258
C A+G PG CCGG C
Sbjct: 53 CLAVGSPGATCCGGRC 68
>05_03_0245 + 10890555-10890962
Length = 135
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 211 CAALGMPGGICCGGFC 258
C A G PG CCGG C
Sbjct: 62 CLAAGSPGATCCGGRC 77
>09_04_0455 +
17728007-17728542,17728697-17728783,17729052-17729290,
17729368-17729486,17729594-17729680,17729758-17729805
Length = 371
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 492 TGIVVLVGWRSGIIVYRWLCWWWIGWYISIRLGW 593
+G+ + GW++ + C+++IG I + LGW
Sbjct: 287 SGVAIGSGWQAAVAYVNIGCYYFIGVPIGVLLGW 320
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -1
Query: 366 AADASSPRSLPERSAVGQ--CSTVQPGSEGAFKRSTKPAETATANASWHA 223
AA A+S + S+ GQ C T PG GA RS + TA A A+WH+
Sbjct: 171 AAAAASAANNGGGSSAGQDSCLTAAPG-RGA--RSKRSRATAAAAAAWHS 217
>08_02_0588 + 19036509-19039235
Length = 908
Score = 28.7 bits (61), Expect = 5.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 543 WLCWWWIGWYISIRLGW 593
W WWW W+ ++ GW
Sbjct: 17 WAWWWWWWWWGDLQGGW 33
>07_03_1363 - 26022333-26023225,26023319-26023451
Length = 341
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = -1
Query: 396 SAAGRPAPGTAADASSPRSLPERSAVGQCSTVQPGSEGAFKRSTKPAETATANA 235
+ +G PG AS E S G + AF+ TKP TA A A
Sbjct: 252 AGSGPATPGATESASGSSEASEVSYGGTALSAAAAPASAFEYETKPTVTAAAAA 305
>09_04_0635 - 19143721-19145165,19145255-19145306
Length = 498
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 318 GQCSTVQPGSEGAFKRSTKPAETATA-NASWHAERCTG 208
G C +QPG E F+ +T A + A N+ W R TG
Sbjct: 416 GTCDAIQPGGE-CFRPNTTAAHASYAFNSYWQQLRKTG 452
>06_03_0344 - 19754868-19754980,19756085-19756162,19756241-19756619
Length = 189
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 381 PAPGTAADASSPRSLPERSAVGQCSTVQPGSEGAFKRSTKPAETATA 241
P PG+ S S PE S+ G T PGS+ + P + +++
Sbjct: 80 PTPGSRPVDRSDLSPPENSSSGDRDTPTPGSQPVDRSDLSPPQNSSS 126
>04_04_0534 + 26071227-26071811
Length = 194
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = -3
Query: 622 YLQSYYRVINQPKRILIYHPIHHQHNHRYTIIPDR-----HPTSTTIPVRPWMLIFAGRE 458
+L ++ R ++P P+ H H Y ++PDR T T I R W R
Sbjct: 118 WLTTWRRTASKPDGYPSGMPVPDGHEHGYGVLPDRLCGRGLGTGTWISGRAWFCSTRARP 177
Query: 457 LPVP 446
P+P
Sbjct: 178 DPLP 181
>03_02_0356 + 7769153-7769285,7769367-7769485,7769821-7770129
Length = 186
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 67 CSFSRSILARCSGGNKAICSSDNCSTCIINAAFS*SEAP 183
CS++ S +A + G+KAI + C C AA + ++AP
Sbjct: 93 CSYNLSYMAVTTTGSKAIAVAFLCIACFALAAGAAADAP 131
>11_06_0213 -
21321676-21322069,21322311-21322507,21322818-21323477,
21323522-21323578,21324741-21324848
Length = 471
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 618 RYRVTWMKHCNCSGWI 665
R+ TW +H NC+GW+
Sbjct: 400 RWNRTWGEHHNCTGWV 415
>10_05_0096 - 9144683-9145270
Length = 195
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Frame = -3
Query: 553 QHNHRYTIIPDRHPTSTTIPVRPWMLIF-AGRELPVPR----RPL-TPCPRCST-RTCA 398
Q NHRY P H T + V L F +G+ VP P PCPR ST R C+
Sbjct: 96 QGNHRYPAFPVLHTTYYLVLVLVRALRFSSGKSQVVPSAARLHPFGRPCPRYSTSRPCS 154
>09_04_0005 +
13612060-13612291,13612381-13612510,13612726-13612926,
13613086-13613185,13613513-13613559,13613871-13613964,
13614042-13614192,13614777-13614923,13614994-13615067,
13615288-13615376,13615840-13615954,13616104-13616301
Length = 525
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 381 PAPGTAADASSPRSLPERSAVGQCSTVQPGSEG 283
P P + A AS+P LPE +A G + + G G
Sbjct: 57 PPPSSPASASAPPPLPESAAAGLDAGIGGGGGG 89
>06_01_0175 -
1371089-1371706,1371812-1371994,1372069-1372324,
1372407-1372976,1373423-1373529,1373664-1374136,
1374279-1374372
Length = 766
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 504 VLVGWRSGIIVYRWLCWWW 560
+LVG+ SG +VYR+ WW
Sbjct: 685 ILVGFLSGYVVYRYRRDWW 703
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 504 VLVGWRSGIIVYRWLCWWW 560
+LVG+ SG +VYR+ WW
Sbjct: 682 ILVGFLSGYVVYRYRRDWW 700
>04_04_1073 - 30606472-30606515,30606897-30606988,30607152-30607243,
30607362-30607469,30607614-30607748,30607826-30607871,
30608320-30608420,30608512-30608649,30608721-30608819,
30608920-30609036,30609941-30610102,30610271-30610330,
30611120-30611216,30611238-30611296,30611364-30611480,
30611922-30612020,30612115-30612180,30612405-30612542,
30612659-30612742,30612820-30612892,30612937-30612992,
30613074-30613182,30613253-30613335,30613406-30613489,
30613679-30613750,30613827-30613904,30613984-30614067,
30614142-30614212,30614497-30614566,30614866-30614955,
30615046-30615177,30615250-30615350,30615634-30615691,
30615762-30615878,30617981-30618133
Length = 1094
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 484 WMLIFAGRELPVPRRPL 434
W L F G+ +PVP RPL
Sbjct: 1051 WPLAFVGKLIPVPERPL 1067
>01_06_0901 -
32849722-32849745,32849788-32849856,32850817-32850927,
32851002-32851259
Length = 153
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -1
Query: 369 TAADASSPRSLPERSAVGQCSTVQPGSEGAFKRSTKPAETATANASWHA 223
T A ASSP +LP S S+V P + A K A +A W A
Sbjct: 7 TTAAASSPAALPAASTTAPASSVSPAAAAA-----KRPHLAGDDAPWRA 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,070,213
Number of Sequences: 37544
Number of extensions: 440871
Number of successful extensions: 1745
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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