Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e04r
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 73 3e-13
SB_24103| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0) 29 4.0
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_31279| Best HMM Match : PI3K_C2 (HMM E-Value=0.76) 29 5.3
SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31) 28 7.0
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 25 8.4
SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42) 28 9.2
SB_31969| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 9.2
SB_16223| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/53 (64%), Positives = 40/53 (75%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKPAQ 585
EAR MLLQNPQLAYALLQAQV+M+IVDP A ++LH N +P + PG P Q
Sbjct: 166 EARQMLLQNPQLAYALLQAQVVMKIVDPVIAQSILHRPNEMPGAIQPGGAPLQ 218
>SB_24103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 104 AVTKRSVRRITAALALSTRPSLDQKHPMEYLECS*PVQRSACQEAFAVAVSAGFVDR 274
AVT+ VR++ A L S D HP EC+ PV ++ F ++ AG + R
Sbjct: 52 AVTEEGVRKLLAGLKSSKAAGPDSFHPRVLKECA-PVISPILKQIFQKSLDAGNLPR 107
>SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)
Length = 564
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 325 RGWPMLHRTTRIRGCVQAIHETSRNRHSKCLLAC 224
RG M RIRGCV ++ E N +K L C
Sbjct: 260 RGKKMKENQQRIRGCVLSVIERMDNEFTKMLQGC 293
>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 507 LVGWRSGIIVYRWLCWWWIGWYISIRLGWFIT 602
+ GW +G + WL W GW GW +T
Sbjct: 229 MAGWLAGWLA-GWLAGWLAGWLAGWLAGWRVT 259
>SB_31279| Best HMM Match : PI3K_C2 (HMM E-Value=0.76)
Length = 275
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 674 RIVDPATAVTMLHPSNPVPPILLPGDKP 591
R+ P TA T +HP P P + P D P
Sbjct: 203 RLQPPLTAATTIHPPVPPPSVPPPPDTP 230
>SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 529
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 574 IYHPIHHQHNHRYTIIPDRHPTSTTIPVRPWM 479
++HP+ Q+ HR +P RHP T VR W+
Sbjct: 412 VWHPVC-QYRHRSIPVPLRHPQYLTGCVRLWI 442
>SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 393 AAGRPAPGTAADASSPRSLPERSAVGQCSTVQPGSEGAFKRSTKPAETATANAS 232
AA P P +AA S+ + + GQ S PG A ++T T+ A+A+
Sbjct: 86 AATTPGPSSAAPTSAAPTSAGPTTGGQTSGSTPGGTTAAPQTTPGGATSAASAT 139
>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
Length = 491
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = -3
Query: 607 YRVINQPKRILIYHPIHHQHNHRYTII-----PDRHPTSTT--IPVR-PWMLIFAGRELP 452
+ V P +++ P+HH + + P H +PVR P L+ R +P
Sbjct: 261 HHVDRVPFPVMVNRPVHHTERIPFPVPFVVNRPIHHTVQVPYPVPVRGPSRLVIINRPVP 320
Query: 451 VPRRPLTPCP 422
+P RP+ P P
Sbjct: 321 MPSRPV-PVP 329
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 24.6 bits (51), Expect(2) = 8.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3
Query: 559 HHQHNHRYTIIPDR 518
HH H+HRY ++ +R
Sbjct: 250 HHHHHHRYAMLINR 263
Score = 21.8 bits (44), Expect(2) = 8.4
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -3
Query: 583 RILIYHPIHHQHNHR 539
+ ++YH HH H R
Sbjct: 229 KTILYHHHHHHHRRR 243
>SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
Length = 481
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 93 RQYTPAERTNREEHTAALEIRIERIVFSVI 4
R++ A NRE H E R +IVFSV+
Sbjct: 268 RKWNRASAKNRESHHMRSETRTAKIVFSVL 297
>SB_31969| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 655
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 291 SEGAFKRSTKPAETATANASWHAERCTG*EHS 196
S G+ KRST PA TA + A+R EHS
Sbjct: 383 SRGSRKRSTAPAHQVTAISQIPAQRVAKDEHS 414
>SB_16223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 519
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 508 STTIPVRPWMLIFAGRELPVPRRPLTPCPRCSTRT 404
+T P+RP+++ F LP+ +R L C + + +T
Sbjct: 191 ATNFPLRPFVIPFLKANLPLLQRELLQCAQMAKQT 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,533,368
Number of Sequences: 59808
Number of extensions: 478934
Number of successful extensions: 1710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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