Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e04r
(747 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95327-4|CAI42681.1| 225|Homo sapiens cleavage stimulation fact... 70 1e-11
Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation fact... 70 1e-11
Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation fact... 70 1e-11
M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation fact... 70 1e-11
BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation fa... 70 1e-11
BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage sti... 70 1e-11
BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation fa... 70 1e-11
BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation fa... 69 1e-11
AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein. 69 1e-11
AK222574-1|BAD96294.1| 616|Homo sapiens cleavage stimulation fa... 69 1e-11
AB014589-1|BAA31664.1| 547|Homo sapiens KIAA0689 protein protein. 69 1e-11
X81649-1|CAA57309.1| 850|Homo sapiens gastric mucin protein. 30 7.7
AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein. 30 7.7
>Z95327-4|CAI42681.1| 225|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 225
Score = 69.7 bits (163), Expect = 1e-11
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKP 591
EARNMLLQNPQLAYALLQAQV+MRIVDP A+ +LH +P ++ +P
Sbjct: 148 EARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQP 198
>Z95327-3|CAI42680.1| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 69.7 bits (163), Expect = 1e-11
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKP 591
EARNMLLQNPQLAYALLQAQV+MRIVDP A+ +LH +P ++ +P
Sbjct: 157 EARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQP 207
Score = 67.3 bits (157), Expect = 5e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -2
Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 51
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
>Z83819-6|CAB06072.2| 577|Homo sapiens cleavage stimulation factor,
3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 69.7 bits (163), Expect = 1e-11
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKP 591
EARNMLLQNPQLAYALLQAQV+MRIVDP A+ +LH +P ++ +P
Sbjct: 157 EARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQP 207
Score = 67.3 bits (157), Expect = 5e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -2
Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 51
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
>M85085-1|AAA35724.1| 577|Homo sapiens cleavage stimulation factor
protein.
Length = 577
Score = 69.7 bits (163), Expect = 1e-11
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKP 591
EARNMLLQNPQLAYALLQAQV+MRIVDP A+ +LH +P ++ +P
Sbjct: 157 EARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQP 207
Score = 67.3 bits (157), Expect = 5e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -2
Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 51
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
>BT009778-1|AAP88780.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 69.7 bits (163), Expect = 1e-11
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKP 591
EARNMLLQNPQLAYALLQAQV+MRIVDP A+ +LH +P ++ +P
Sbjct: 157 EARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQP 207
Score = 67.3 bits (157), Expect = 5e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -2
Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 51
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
>BC033135-1|AAH33135.1| 559|Homo sapiens Similar to cleavage
stimulation factor, 3' pre-RNA, subunit 2, 64kD protein.
Length = 559
Score = 69.7 bits (163), Expect = 1e-11
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKP 591
EARNMLLQNPQLAYALLQAQV+MRIVDP A+ +LH +P ++ +P
Sbjct: 156 EARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQP 206
Score = 67.3 bits (157), Expect = 5e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -2
Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 51
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 516 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 556
>BC017712-1|AAH17712.1| 577|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa protein.
Length = 577
Score = 69.7 bits (163), Expect = 1e-11
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPGDKP 591
EARNMLLQNPQLAYALLQAQV+MRIVDP A+ +LH +P ++ +P
Sbjct: 157 EARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQP 207
Score = 67.3 bits (157), Expect = 5e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Frame = -2
Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 51
D EKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 534 DHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 574
>BC028239-1|AAH28239.1| 616|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
protein.
Length = 616
Score = 69.3 bits (162), Expect = 1e-11
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = -2
Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 51
DQEKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 573 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 613
Score = 67.7 bits (158), Expect = 4e-11
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPG 600
EARNMLLQNPQLAYALLQAQV+MRI+DP A+ +LH V P L+PG
Sbjct: 157 EARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTP-LIPG 203
>AY130299-1|AAN05429.1| 616|Homo sapiens tCstF-64 protein.
Length = 616
Score = 69.3 bits (162), Expect = 1e-11
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = -2
Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 51
DQEKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 573 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 613
Score = 67.7 bits (158), Expect = 4e-11
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPG 600
EARNMLLQNPQLAYALLQAQV+MRI+DP A+ +LH V P L+PG
Sbjct: 157 EARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTP-LIPG 203
>AK222574-1|BAD96294.1| 616|Homo sapiens cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa, tau variant
variant protein.
Length = 616
Score = 69.3 bits (162), Expect = 1e-11
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = -2
Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 51
DQEKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 573 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 613
Score = 67.7 bits (158), Expect = 4e-11
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPG 600
EARNMLLQNPQLAYALLQAQV+MRI+DP A+ +LH V P L+PG
Sbjct: 157 EARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTP-LIPG 203
>AB014589-1|BAA31664.1| 547|Homo sapiens KIAA0689 protein protein.
Length = 547
Score = 69.3 bits (162), Expect = 1e-11
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = -2
Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKST 51
DQEKAALIMQVLQL+ +QIA+LPPEQR SIL+LKEQI KST
Sbjct: 504 DQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 544
Score = 67.7 bits (158), Expect = 4e-11
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = -2
Query: 743 EARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLHPSNPVPPILLPG 600
EARNMLLQNPQLAYALLQAQV+MRI+DP A+ +LH V P L+PG
Sbjct: 88 EARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTP-LIPG 134
>X81649-1|CAA57309.1| 850|Homo sapiens gastric mucin protein.
Length = 850
Score = 30.3 bits (65), Expect = 7.7
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -1
Query: 396 SAAGRPAPGTAADASSPRSLPERSAVGQCST--VQPGSEGAFKRSTKPAETATANASWHA 223
+A PAPGTA S P V ST + + G S+KP T + +S
Sbjct: 516 TARTTPAPGTATSVKKTFSTPSPPPVPATSTSSMSTTAPGTSVVSSKPTPTEPSTSSCLQ 575
Query: 222 ERCT 211
E CT
Sbjct: 576 ELCT 579
>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
Length = 2448
Score = 30.3 bits (65), Expect = 7.7
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -1
Query: 396 SAAGRPAPGTAADASSPRSLPERSAVGQCST--VQPGSEGAFKRSTKPAETATANASWHA 223
+A PAPGTA S P V ST + + G S+KP T + +S
Sbjct: 1520 TARTTPAPGTATSVKKTFSTPSPPPVPATSTSSMSTTAPGTSVVSSKPTPTEPSTSSCLQ 1579
Query: 222 ERCT 211
E CT
Sbjct: 1580 ELCT 1583
Score = 30.3 bits (65), Expect = 7.7
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -1
Query: 396 SAAGRPAPGTAADASSPRSLPERSAVGQCST--VQPGSEGAFKRSTKPAETATANASWHA 223
+A PAPGTA S P V ST + + G S+KP T + +S
Sbjct: 1893 TARTTPAPGTATSVKKTFSTPSPPPVPATSTSSMSTTAPGTSVVSSKPTPTEPSTSSCLQ 1952
Query: 222 ERCT 211
E CT
Sbjct: 1953 ELCT 1956
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,283,802
Number of Sequences: 237096
Number of extensions: 2330799
Number of successful extensions: 11182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11169
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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