Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e04r
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical pr...    50   2e-06
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like ...    29   4.6  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    28   8.1  
AL032626-6|CAA21526.1|  132|Caenorhabditis elegans Hypothetical ...    28   8.1  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    28   8.1  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    28   8.1  

>Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical
           protein F56A8.6 protein.
          Length = 336

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/37 (56%), Positives = 30/37 (81%)
 Frame = -2

Query: 746 NEARNMLLQNPQLAYALLQAQVIMRIVDPATAVTMLH 636
           +E    L+++PQ+AYA+LQA V+MRIVDP TA+ +LH
Sbjct: 159 SELHKFLVEHPQIAYAVLQAAVVMRIVDPQTALGLLH 195



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 15/42 (35%), Positives = 29/42 (69%)
 Frame = -2

Query: 173 DQEKAALIMQVLQLSDEQIALLPPEQRASILLLKEQIAKSTQ 48
           +Q+ A L+MQV+QLS+  + +LP   R  I+ L++Q+ ++ +
Sbjct: 295 EQQNAELLMQVMQLSEHDLQMLPAGDREKIIELRQQLKRNVK 336


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -1

Query: 396  SAAGRPAPGTAADASSPRSLPERSAVGQCSTVQPGSEGAFKRSTKPAETATANAS 232
            S +  P+P +   +S   + P  S + Q ST  PGS G+    TKP+ T + +AS
Sbjct: 1020 SISPSPSPSSTIGSSQGSTSPVVSTISQGSTETPGSTGS--TVTKPS-TVSGSAS 1071



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 375 PGTAADASSPRSLPERSAVGQCSTVQPGSEGAFKRSTKPAETATA 241
           PG+++  +S   +   S+ G   TV PGS   +  ST  A ++++
Sbjct: 363 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSS 407


>Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical
           protein C41G7.2 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = -1

Query: 396 SAAGRPA---PGTAADASSPRSLPERSAVGQCST---VQPGSEGAFKRSTKPAETATA 241
           +AA RP    PG    A+   SLPERSA+ + ST    +P  +    R+T     +T+
Sbjct: 52  AAACRPPSRLPGATISATGRASLPERSAMAKTSTSSHSRPALQSTASRNTTLTAASTS 109


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 375 PGTAADASSPRSLPERSAVGQCSTVQPGSEGAFKRSTKPAETATA 241
           PG+++  +S   +   S+ G   TV PGS   +  ST  A ++++
Sbjct: 156 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSS 200


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 375 PGTAADASSPRSLPERSAVGQCSTVQPGSEGAFKRSTKPAETATA 241
           PG+++  +S   +   S+ G   TV PGS   +  ST  A ++++
Sbjct: 363 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSS 407


>AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = -1

Query: 396 SAAGRPA---PGTAADASSPRSLPERSAVGQCST---VQPGSEGAFKRSTKPAETATA 241
           +AA RP    PG    A+   SLPERSA+ + ST    +P  +    R+T     +T+
Sbjct: 52  AAACRPPSRLPGATISATGRASLPERSAMAKTSTSSHSRPALQSTASRNTTLTAASTS 109


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 613 IGGT-GLLG*SIVTAVAGSTILIMTCACSSAYASCG 717
           IGGT G  G ++ T VAGST++      + A+ S G
Sbjct: 606 IGGTMGSTGMTLTTLVAGSTVVTPMTEATGAFLSAG 641


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 574 IYHPIHHQHNHRYTIIPDRHPTSTTIPVRP 485
           I+H  HH H+H  T       T+TT  V P
Sbjct: 188 IHHQHHHHHHHTTTTPSTTTSTTTTTTVAP 217


>AL032626-6|CAA21526.1|  132|Caenorhabditis elegans Hypothetical
           protein Y37D8A.6 protein.
          Length = 132

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -3

Query: 607 YRVINQPKRILIYHPIHHQHNHRYTIIPDRHPTSTTIPV--RPWMLIFAGRELPVPRRPL 434
           Y    QP   +IY P         T +P + P    + V  +P  +I  G ++     P 
Sbjct: 17  YAEAQQPPPTIIYPP---------TQMPQQGPGQGPVYVVQQPQEIIIVGTKMAPSFEPY 67

Query: 433 TP-CPRCSTRTC 401
           T  CPRC+T  C
Sbjct: 68  TEFCPRCNTNVC 79


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 574 IYHPIHHQHNHRYTIIPDRHPTSTTIPVRP 485
           I+H  HH H+H  T       T+TT  V P
Sbjct: 188 IHHQHHHHHHHTTTTPSTTTSTTTTTTVAP 217


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 662 PATAVTMLHPSNPVPPILLP 603
           P TA   LHP  PVPP+ +P
Sbjct: 21  PVTAPPGLHPPPPVPPVPVP 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,097,397
Number of Sequences: 27780
Number of extensions: 340724
Number of successful extensions: 1254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)