Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e04r
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    26   0.43 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.7  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   7.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   7.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 26  SILISNAAVCSSRFVLSAGVYWRVVR 103
           ++LI+   +CSS     A V+WR VR
Sbjct: 164 AVLIAIVWICSSAISFPAIVWWRAVR 189


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 133 YPTNRSLCYRPNNAPVY--SC*KNKSRRAHSSV 41
           YPTNRSL  R     +Y     ++K RRA   +
Sbjct: 131 YPTNRSLFIREQTEEMYREMLLEHKKRRARRDI 163



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 230 QEAFAVAVSAGFVDRLNAPSDPGCTVEHWP 319
           +E +  +V +G +DRL+  +DP C V ++P
Sbjct: 698 KEGYLHSVVSGALDRLHYETDP-C-VRYYP 725


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 211 CAALGMPGGICCGGFCWFRGSLERTLGSGLYG 306
           C +LG  GG C  G C  R +  + L    +G
Sbjct: 64  CLSLGKAGGHCEKGVCICRKTSFKDLWDKRFG 95


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 528 IIVYRWLCWWWIGWYIS 578
           +I Y   CWW I W I+
Sbjct: 482 MIGYYPCCWWKICWTIT 498


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 528 IIVYRWLCWWWIGWYIS 578
           +I Y   CWW I W I+
Sbjct: 535 MIGYYPCCWWKICWTIT 551


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 604 GSKIGGTGLLG*SIVTAVAGSTILIMTCA 690
           G    G G++G +I + VAG+  L +  A
Sbjct: 7   GGSSAGVGVVGGTIASVVAGAASLTLVKA 35


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 332 RDPRLANAPPYNPDPRVRSSDP 267
           R+P LA A PYN    V S  P
Sbjct: 885 RNPALALAEPYNQRGTVVSPPP 906


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 332 RDPRLANAPPYNPDPRVRSSDP 267
           R+P LA A PYN    V S  P
Sbjct: 923 RNPALALAEPYNQRGTVVSPPP 944


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,721
Number of Sequences: 438
Number of extensions: 4271
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)