Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11e04f
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 107 1e-24
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 98 9e-22
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 66 3e-12
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 66 3e-12
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 62 5e-11
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 62 7e-11
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 60 2e-10
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 60 3e-10
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 60 3e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 58 7e-10
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 57 2e-09
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 54 2e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 53 3e-08
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 53 3e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 4e-08
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 52 4e-08
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 52 4e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 52 8e-08
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 51 1e-07
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 50 2e-07
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 49 5e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 47 2e-06
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 46 4e-06
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 45 7e-06
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 44 1e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 44 1e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 2e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 2e-05
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 44 2e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 2e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 43 4e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 41 1e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 3e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 4e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 39 4e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.002
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 37 0.002
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 36 0.005
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 34 0.012
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.012
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 31 0.088
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.20
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.20
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 5.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 5.8
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 7.6
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 25 7.6
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 25 7.6
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 7.6
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 107 bits (256), Expect = 1e-24
Identities = 49/81 (60%), Positives = 60/81 (74%)
Frame = +3
Query: 180 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 359
V+VGNIPYE EE++ DIF + GPV SF+LV D E+G+PKGYGFCEY D TA SA+RNL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 360 NGYEIGGRSLRVDNACTEKSR 422
N Y+ G R LRVD ++ R
Sbjct: 67 NNYDAGTRRLRVDFPTADQIR 87
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 97.9 bits (233), Expect = 9e-22
Identities = 42/73 (57%), Positives = 56/73 (76%)
Frame = +3
Query: 180 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 359
VFVGNIPY+ +E+++ +IF++VGPV +FKLV D ETG KGYGFCE+ D ET A+R L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 360 NGYEIGGRSLRVD 398
N E+G R +RV+
Sbjct: 69 NNSELGPRKIRVE 81
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 66.5 bits (155), Expect = 3e-12
Identities = 25/75 (33%), Positives = 51/75 (68%)
Frame = +3
Query: 180 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 359
++VGN+P+ ++ L D+F+++G V+ ++ ++ TG+ KG+G +++++ A S++ L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEKL 340
Query: 360 NGYEIGGRSLRVDNA 404
NGY GGR L++ A
Sbjct: 341 NGYRYGGRPLQLSYA 355
Score = 43.6 bits (98), Expect = 2e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +3
Query: 174 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 353
R V+VGN+ Y+ +LK+ +VG VL+ + + + G KG EY E A +A++
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCE-ILNLPNGLSKGCAIIEYSTAEEARTAIK 124
Query: 354 NLNGYEIGGR 383
L+ + GR
Sbjct: 125 TLSNQKFMGR 134
Score = 39.1 bits (87), Expect = 4e-04
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +3
Query: 195 IPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEI 374
+PY + LKD+F + G V+ + ++E G+ +G G + A+ A++ L+ +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNTDF 248
Query: 375 GGRSLRV 395
GR+L V
Sbjct: 249 MGRTLEV 255
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 66.1 bits (154), Expect = 3e-12
Identities = 27/79 (34%), Positives = 50/79 (63%)
Frame = +3
Query: 180 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 359
+++GN+ ++ E+ + +FSE G + LV D+ETGK KG+ F +Y+DQ + + A+ N+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 360 NGYEIGGRSLRVDNACTEK 416
++ R +RVD+ + K
Sbjct: 93 TNVKLLDRLVRVDHVASYK 111
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 62.1 bits (144), Expect = 5e-11
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Frame = +3
Query: 111 TIIKMDKSKEKEEQSIM--DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRE 284
T+++ + E+ +++ D + +FVGN+ + +E L FSE ++ K+V DRE
Sbjct: 7 TVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE 66
Query: 285 TGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 464
GK +G+GF +KD + L A R NG IG R +++ A ++ E+ ++ N
Sbjct: 67 -GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRN 125
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 61.7 bits (143), Expect = 7e-11
Identities = 34/102 (33%), Positives = 61/102 (59%)
Frame = +3
Query: 114 IIKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGK 293
II ++ +EEQ +K+ + +FVG +P + TEE+ ++ F++ G VL L+ D++TG+
Sbjct: 231 IIDPKRAIPREEQ---EKTAK-MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGR 286
Query: 294 PKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKS 419
P+G+GF Y + E+A+ A + I G+ + V A + S
Sbjct: 287 PRGFGFVTY-ENESAVEATMSQPYITIHGKPVEVKRATPKAS 327
Score = 50.0 bits (114), Expect = 2e-07
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +3
Query: 144 EEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYK 323
EE S ++ +F+G + +E T++ L+D F + G VL ++ D TG+ +G+GF +K
Sbjct: 153 EETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
Query: 324 DQETALSAM 350
+ + M
Sbjct: 213 NPKCVNEVM 221
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 60.5 bits (140), Expect = 2e-10
Identities = 30/102 (29%), Positives = 53/102 (51%)
Frame = +3
Query: 123 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 302
+ + + + + + + +V++ N+ E TE++ D+F + G + S LV D + KP+G
Sbjct: 244 VSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRG 302
Query: 303 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 428
+GF Y + E A A+ LN E G+ L V A + R E
Sbjct: 303 FGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344
Score = 51.6 bits (118), Expect = 8e-08
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = +3
Query: 141 KEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 320
+ + S+ +VF+ N+ + L D FS G +LS K+ D E G KGYGF +
Sbjct: 157 QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHF 215
Query: 321 KDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRM-EMQAL 440
E+A +A+ ++NG + + + V + + + R +++AL
Sbjct: 216 DSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEAL 256
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 356
S++VG + TE L ++F+ +GPV S ++ D T + GY + + + E A+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 357 LNGYEIGGRSLRV 395
LN I GR R+
Sbjct: 141 LNYTLIKGRPCRI 153
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 59.7 bits (138), Expect = 3e-10
Identities = 34/104 (32%), Positives = 55/104 (52%)
Frame = +3
Query: 132 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 311
SK QS + +FVGN+ +E T+ LK+ F +VG + +L+ +TGK KG+GF
Sbjct: 214 SKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGF 273
Query: 312 CEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALM 443
++ D +T + AM E+G S R++ RM ++ M
Sbjct: 274 VDFPDIDTCMKAM------ELGHNSWRLEYGEDRSKRMRNKSPM 311
Score = 29.1 bits (62), Expect = 0.47
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 120 KMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIF 236
K + +E E Q +S ++VGN+ + T+E L D F
Sbjct: 87 KYGRKEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFF 125
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 59.7 bits (138), Expect = 3e-10
Identities = 31/88 (35%), Positives = 52/88 (59%)
Frame = +3
Query: 168 SMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSA 347
S ++FV N+ ++ ++ L + FS+VGP+ +V + ETG+ +GYGF + E A A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 348 MRNLNGYEIGGRSLRVDNACTEKSRMEM 431
+ L ++ GR LR+D A T + R E+
Sbjct: 63 AKELKNKKLHGRILRLDFA-TPRKRSEV 89
Score = 45.2 bits (102), Expect = 7e-06
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Frame = +3
Query: 117 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATE-EKLKDIFSEVGPVLSFKLVFDRETGK 293
+ D++K ++ D R + + N+P+ + + L+ FS+ G V K+ + G+
Sbjct: 89 VDTDQNKAVKKTIRQDNRPRLI-IRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGR 146
Query: 294 PKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTE 413
G+ F KD++ A AM +LNG EI GR + VD A ++
Sbjct: 147 MCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYK 323
+VFV N+ +E TE++L + F + GP+ KLV D T + G GF +++
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 32.3 bits (70), Expect = 0.050
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 288 GKPKGYGFCEYKDQETALSAMRNLNGYEI 374
G+ KG+GF ++ + AL A+R LNG EI
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREI 564
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 58.4 bits (135), Expect = 7e-10
Identities = 27/74 (36%), Positives = 45/74 (60%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 356
+VFVGN+ + ATE+ L F G + S +L D ++G+ KG+G+ + D ++A +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-E 425
Query: 357 LNGYEIGGRSLRVD 398
+NG+ I GR R+D
Sbjct: 426 MNGHFIAGRPCRLD 439
Score = 52.0 bits (119), Expect = 6e-08
Identities = 22/74 (29%), Positives = 43/74 (58%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 356
+VFVG + + ++ L F E G ++ +++ D ++G+ KGYG+ +++ E A +A+
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 357 LNGYEIGGRSLRVD 398
EI GR + +D
Sbjct: 324 NGTKEIDGRMVNLD 337
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 56.8 bits (131), Expect = 2e-09
Identities = 26/97 (26%), Positives = 51/97 (52%)
Frame = +3
Query: 117 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 296
+ +S + + ++D S +++ N+P E+++ ++ G +LSF+L+ + G
Sbjct: 292 VSQKRSDDYAKNDVLD-SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSS 350
Query: 297 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNAC 407
KG+ FCE+K+ A A+ L+G + G L AC
Sbjct: 351 KGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFAC 387
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 53.6 bits (123), Expect = 2e-08
Identities = 35/105 (33%), Positives = 55/105 (52%)
Frame = +3
Query: 186 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 365
VGN+ ++ TE L D F E V S +LV D T + +G+G+ E++ +T LSA L+G
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADT-LSAALALSG 154
Query: 366 YEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEKAP 500
++ GR +R+ A +S + G V P EP ++P
Sbjct: 155 EDLMGRPVRITVAEPRRS-FAREERSTGDWVRRGPLPPAEPAESP 198
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 53.2 bits (122), Expect = 3e-08
Identities = 29/94 (30%), Positives = 46/94 (48%)
Frame = +3
Query: 123 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKG 302
+DK + + + +FV I E++L+ IFS+ G V +++ + T +G
Sbjct: 84 LDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143
Query: 303 YGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 404
+GF + E A SA+ NLN E GR L V A
Sbjct: 144 FGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 52.8 bits (121), Expect = 3e-08
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +3
Query: 186 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 365
V N+ + EE+L+D+F G + L D+ETG+ KG+ F Y D++ A+ A L+G
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
Query: 366 YEIGGRSLRVD 398
Y LR +
Sbjct: 266 YGWNNLILRCE 276
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 52.4 bits (120), Expect = 4e-08
Identities = 26/74 (35%), Positives = 43/74 (58%)
Frame = +3
Query: 174 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 353
+SV+VGN+ Y T E+L+ F+ G V ++ D+ TG PKG+ + E+ + +A+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
Query: 354 NLNGYEIGGRSLRV 395
LNG + R L+V
Sbjct: 115 -LNGSMLHERPLKV 127
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 52.4 bits (120), Expect = 4e-08
Identities = 24/86 (27%), Positives = 47/86 (54%)
Frame = +3
Query: 135 KEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 314
K+ E + K ++VG +P+ E++++ FS+ GPVL ++ +R+TG K Y F
Sbjct: 92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
Query: 315 EYKDQETALSAMRNLNGYEIGGRSLR 392
E++ + A ++ Y + G+ L+
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQ 177
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 52.4 bits (120), Expect = 4e-08
Identities = 30/78 (38%), Positives = 41/78 (52%)
Frame = +3
Query: 180 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 359
+ V + EATEE+++D+F++ GPV + L DR TG KGY EY E A A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 360 NGYEIGGRSLRVDNACTE 413
N + L VD A E
Sbjct: 72 N-LSLLDEKLEVDFAFLE 88
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 51.6 bits (118), Expect = 8e-08
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Frame = +3
Query: 120 KMDKSKEKEEQSIM---DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETG 290
K +S+ +E S + ++ R+VFV + T +L D F + GPV ++V D+ +G
Sbjct: 219 KRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISG 278
Query: 291 KPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA--LMQGPQVEN 464
+ KG + E+ +++ +A+ L+G + G + V EK+R +A L + E
Sbjct: 279 RSKGVAYVEFCHEDSVQAAIA-LSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEI 337
Query: 465 PY 470
P+
Sbjct: 338 PF 339
Score = 51.6 bits (118), Expect = 8e-08
Identities = 23/70 (32%), Positives = 43/70 (61%)
Frame = +3
Query: 186 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 365
V NI + T+E +K IF G + L D + + KG+G+ +Y++ +A +A+ +NG
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNG 402
Query: 366 YEIGGRSLRV 395
+++ GR++RV
Sbjct: 403 FDLAGRNMRV 412
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 50.8 bits (116), Expect = 1e-07
Identities = 24/78 (30%), Positives = 43/78 (55%)
Frame = +3
Query: 165 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 344
K V+VGN+ + TEE++ +FS+ G + + DR T P G+ F EY + + AL
Sbjct: 29 KQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALD 88
Query: 345 AMRNLNGYEIGGRSLRVD 398
+++ ++ + R +R D
Sbjct: 89 SLKYISRTSLDERIIRAD 106
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 50.0 bits (114), Expect = 2e-07
Identities = 21/80 (26%), Positives = 46/80 (57%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 356
++++GN+ + T+ L ++ + GPV++ + DR G+GFCE+ ++ A +
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 357 LNGYEIGGRSLRVDNACTEK 416
LN ++ G+ +RV+ A ++
Sbjct: 72 LNQVKLFGKPIRVNRASQDR 91
Score = 48.0 bits (109), Expect = 9e-07
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 356
++FVGN+ E L D FS +G ++ V E G+ KGYGF Y ETA +A+
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 357 LNGYEIGGRSLRVDNACTEKSRME 428
+N + + + V A + + E
Sbjct: 160 MNNQFLMNKPITVSYAFKREGKGE 183
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 48.8 bits (111), Expect = 5e-07
Identities = 24/74 (32%), Positives = 39/74 (52%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 356
++ V NIP+ ++ L D F ++G + + + G +G F + E A ++
Sbjct: 203 AIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQT 262
Query: 357 LNGYEIGGRSLRVD 398
LNGYEI GR LRV+
Sbjct: 263 LNGYEINGRRLRVE 276
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 47.2 bits (107), Expect = 2e-06
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 174 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 353
R VFVGN+ +EA EE L F + G + ++V D +T KG+ + ++KD A+
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 354 NLNGYEI-GGRSLRVDNACTEKSR 422
LN ++ GR+LR+ A + K +
Sbjct: 330 -LNEKKMPEGRTLRIMRAKSTKPK 352
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 46.0 bits (104), Expect = 4e-06
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +3
Query: 180 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 359
+FVG IP +AT E + D F G +L KL+ G+GF E +D A + +
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVNDF 57
Query: 360 NGYEIGGRSLRVDNACTEKSRME 428
G E G + V+ A E+ R E
Sbjct: 58 QGKEFMGSRIVVEPARGERRRRE 80
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 45.2 bits (102), Expect = 7e-06
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 356
++ + NIP+ +E L +F+ + + + + G +G F + E A + ++
Sbjct: 233 AIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQV 292
Query: 357 LNGYEIGGRSLRVD 398
LNGYEI GR LRV+
Sbjct: 293 LNGYEITGRRLRVE 306
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +3
Query: 213 EEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 392
+ +L+D+FS G +LS L +G KGYGF ++ E A+ A LNG +G + +
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIF 456
Query: 393 V 395
V
Sbjct: 457 V 457
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 44.4 bits (100), Expect = 1e-05
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +3
Query: 153 SIMDKSMRSV-FVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQ 329
S +++ + S+ F+ N+ ++ T E++ D+F GPV +L T + +G F Y++
Sbjct: 4 STVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYENV 60
Query: 330 ETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQAL 440
+ A A L+GY R L V E+++++ Q L
Sbjct: 61 QDARRACEKLSGYNFMDRYLVVHYYNPERAKVDGQDL 97
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +3
Query: 117 IKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP 296
++ S++ + I +++V N+ + +E+ + +F + LS + + +P
Sbjct: 600 VEATTSEKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRP 659
Query: 297 -----KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 395
G+GF E+KD+ +A++AM +NG+ + G L +
Sbjct: 660 GKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEI 697
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +3
Query: 123 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKL--VFDRETGKP 296
+D + E +Q + + N+P+EAT++ ++ + G + S ++ FDR
Sbjct: 704 VDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA--- 760
Query: 297 KGYGFCEYKDQETALSAMRNLNGYEIGGRSL 389
+G+ F E+ A +AMR L + GR L
Sbjct: 761 RGFAFAEFVTAREAANAMRALKNTHLLGRHL 791
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/67 (31%), Positives = 38/67 (56%)
Frame = +3
Query: 135 KEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 314
K K ++ + +FVGN+P +++ E L+ F G V S ++ D+ +G+ KGY F
Sbjct: 79 KSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFV 138
Query: 315 EYKDQET 335
E+ + +T
Sbjct: 139 EFINPKT 145
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 353
S+FVG++ + L F + P S K++ D TG + YGF + ++ A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 354 NLNGYEIGGRSLRVDNACTEKSRMEMQA 437
++ GY GR LR+ + + KSR + A
Sbjct: 243 HMQGYLCQGRPLRI-SVASPKSRASIAA 269
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = +3
Query: 159 MDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 338
M++ +V VGN+ TE L + F G ++S L +E + Y F E+ + E A
Sbjct: 1 MERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVAL-HRKEKAVDRSYAFVEFDEPEDA 59
Query: 339 LSAMRNLNGYEIGGRSLRVDNA 404
AM N+N + R +RV A
Sbjct: 60 KEAMENMNYSILCDRCIRVSPA 81
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 43.6 bits (98), Expect = 2e-05
Identities = 19/84 (22%), Positives = 43/84 (51%)
Frame = +3
Query: 147 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 326
++ ++ +++F+ + Y+ E ++ F+ GP+ ++V ++ TGK GY F ++
Sbjct: 91 DRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFER 150
Query: 327 QETALSAMRNLNGYEIGGRSLRVD 398
+ A + G + GR + VD
Sbjct: 151 ERDLKVAYKASAGLMLNGRRIVVD 174
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +3
Query: 174 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL---S 344
R+V++ +P ++E L + G V S K + D ET KGYGF ++++++AL S
Sbjct: 296 RNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICIS 355
Query: 345 AMRNLNGYE 371
AM L GY+
Sbjct: 356 AM-TLCGYQ 363
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Frame = +3
Query: 114 IIKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDR---- 281
+I ++K EK ++S K S++VGN+P L ++F G F ++ +
Sbjct: 1 MIALEKLSEKNKRSTK-KCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKS 59
Query: 282 -ETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVD 398
++ P + F ++++ +A +A+ +LNG G +L+V+
Sbjct: 60 TDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
Score = 38.7 bits (86), Expect = 6e-04
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 216 EKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 395
++L+++FS+ G + S L T KGYGF + A+ A+ LNG G + L V
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 396 DNACTEKSR 422
+ A + R
Sbjct: 495 NYAEKREDR 503
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.5 bits (88), Expect = 3e-04
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 180 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 359
+FV + +E L+ IFS G ++S +++ D+ETG Y F E+ ++E+ A +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 360 NGYEIGGRSLRVD 398
I + VD
Sbjct: 306 QNVLIDDSRIHVD 318
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 39.1 bits (87), Expect = 4e-04
Identities = 20/78 (25%), Positives = 40/78 (51%)
Frame = +3
Query: 162 DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 341
++ +R++ V N+ T+E + +IF G + + +++ KGY + EY + A
Sbjct: 95 EEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAA 154
Query: 342 SAMRNLNGYEIGGRSLRV 395
+A+ +N E+ G L V
Sbjct: 155 NAVDKMNNAELDGEELFV 172
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 39.1 bits (87), Expect = 4e-04
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Frame = +3
Query: 153 SIMDKSMRSVFVGNIPYEATEEKL----KDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 320
S+ K + +FV ++ +EE+L KD F + GP+L K++ D + Y F ++
Sbjct: 72 SVRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQF 128
Query: 321 KDQETALSAMRNLNGYEIGGRSLRVDNACTEK----SRMEMQALMQGPQVEN---PYGDP 479
++ + A A+ + GR +R++ A + S Q + ++N PYG+
Sbjct: 129 QNTDDASKALSEAQNTILDGRHIRIERAKVNRTIRISSAPHQPYITKKDIDNLLEPYGEV 188
Query: 480 VEPEKAPE 503
+ + P+
Sbjct: 189 EDVTEIPD 196
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 356
++++G + TE ++ +++ +G + KL+ +R TG GY F E+ A SAM +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 357 LNGYEIGG 380
+N I G
Sbjct: 153 MNNKPIPG 160
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +3
Query: 180 VFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDR-ETGK---PKGYGFCEYKDQETALSA 347
VFVG + + +++ +F VG V + F R G P G F + +QE A
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 348 MRNLNGYEIGGRSLRVDNA 404
+ LNG + R + V A
Sbjct: 106 IETLNGKTLDDREIVVQKA 124
Score = 33.1 bits (72), Expect = 0.029
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 13/125 (10%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPV------------LSFKLVFDRETGKPKGYGFCEY 320
S++V + T E LK++F P + ++ E + +G+GF +
Sbjct: 206 SIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSF 265
Query: 321 KDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVE-PEKA 497
+ E A+ +NG ++G +L V +A + + Q + E +P+E E A
Sbjct: 266 ANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDK-------QNDENEKNENEPIEASESA 318
Query: 498 PEAIS 512
P +S
Sbjct: 319 PTNVS 323
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 35.5 bits (78), Expect = 0.005
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 174 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 353
R +F+GNIP E + + I G + S++ V D + +GF E++ E A+
Sbjct: 139 RMLFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSM-TSFGFAEFESNEQFSRALE 197
Query: 354 NLNGYEI 374
LN + +
Sbjct: 198 ALNDFVV 204
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 34.3 bits (75), Expect = 0.012
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFS-EVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 353
+++VGN+P +EE+LK +FS +VG +K + R G F E+++ A+ A++
Sbjct: 427 TIYVGNLPPSTSEEELKVLFSTQVG----YKRLCFRTKGNGP-MCFVEFENIPYAMEALK 481
Query: 354 NLNG 365
NL G
Sbjct: 482 NLQG 485
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.012
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 174 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDR 281
R+VF+GN+P TE+++++ GP+ K+V +R
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 31.5 bits (68), Expect = 0.088
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +3
Query: 177 SVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 356
SVFV NIP E ++ LK S GPV + E + KG + ++ + E A+ N
Sbjct: 316 SVFVKNIPPETSDVSLKSAMSIFGPVKAI------EFARRKGTAYVDFVNHECVQLAL-N 368
Query: 357 LNGYEIGGRSLRVD 398
+I +L ++
Sbjct: 369 KKTLQINNATLNIE 382
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.20
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Frame = +3
Query: 111 TIIKMDKSKEKEEQSIMDKSM-----RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVF 275
T+ K ++ E + S KS +S+ V N+ E +L+ +F G + +++V
Sbjct: 848 TLAKSFETTESNKMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRSLFESYGKL--YRVVL 905
Query: 276 DRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 395
E +G E+ D A A L G+EIGGR L +
Sbjct: 906 HPEH---EG-AVVEFLDIHDAGKASLALEGHEIGGRLLHI 941
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.20
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +3
Query: 174 RSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 353
R+VF+GN+P E+++++ F + G + K++ K F + + A+ +R
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL------SKKNIAFVHFLNIRDAIKVVR 352
Query: 354 NLN 362
L+
Sbjct: 353 TLS 355
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 5.8
Identities = 23/110 (20%), Positives = 42/110 (38%)
Frame = +3
Query: 132 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 311
+ ++ I + R +FV N+P L ++FS++G V D + G
Sbjct: 181 NSNSDDIDIFSHASRYLFVTNLPRIVPYATLLELFSKLGDVKG----IDTSSLSTDGICI 236
Query: 312 CEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALMQGPQVE 461
+ D A+ A ++L L C S +M + QG ++
Sbjct: 237 VAFFDIRQAIQAAKSLRSQRFFNDRLLYFQFCQRSSIQKM--INQGATIQ 284
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect = 5.8
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -3
Query: 307 P*PLGLPVSRSKTSLKDKTGPTSLNMSFNFSSVASYGILP 188
P P LPV KTSL + P S+N+ N +SVA G++P
Sbjct: 908 PPPPPLPV---KTSLNTFSHPDSVNIVANDTSVA--GVMP 942
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 138 EKEEQSIMDKSMRSVFVGNIPYEATEEK 221
EK +Q IMD + ++ F G I + E K
Sbjct: 163 EKSQQMIMDTARKAGFAGGIVVDHPESK 190
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/48 (18%), Positives = 22/48 (45%)
Frame = -2
Query: 272 DKFERQDGSYFTEYVL*FLFCGFVWYITHENRSHGFIHDALFLFFFTF 129
+++ R+D S+ + + +W + + N G++ F+ F F
Sbjct: 48 NRYGREDFSFIVLFSCMIVISALLWALFYMNTPKGYVTTITFMLFVDF 95
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 394 TLNERPPISYPLRFLMALKAVSWSLYSQN 308
+LN+ + PL+ + LKA+ W L+S N
Sbjct: 344 SLNQINILRDPLKAVNVLKAIRWMLWSWN 372
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 144 EEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEV 245
E+++ M+ +F G+IP + E K FS+V
Sbjct: 588 EDRAASSNEMQLLFEGSIPILTSYENYKQSFSDV 621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,353
Number of Sequences: 5004
Number of extensions: 43021
Number of successful extensions: 210
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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