Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e04f
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.8  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       22   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.5  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 515 FTDCFRCFFRFYWI 474
           F  CF CF   YWI
Sbjct: 412 FPVCFVCFNLMYWI 425


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 515 FTDCFRCFFRFYWI 474
           F  CF CF   YWI
Sbjct: 412 FPVCFVCFNLMYWI 425


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 515 FTDCFRCFFRFYWI 474
           F  CF CF   YWI
Sbjct: 350 FPVCFVCFNLMYWI 363


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 468 YGDPVEPEKAPEAISKAVATLPPE 539
           Y  P EPE APE  ++A A   PE
Sbjct: 20  YAAP-EPEPAPEPEAEADAEADPE 42


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 200 WYITHENRSHGFIHDALFLFFFTFIHLYNCML 105
           W I H + S   I     L F T +  YN +L
Sbjct: 208 WEIVHMSHSESTIDSKFGLGFTTDLLSYNILL 239


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 244  TSLNMSFNFSSVASYG 197
            +S N S+NFSSV+  G
Sbjct: 1050 SSSNPSYNFSSVSGDG 1065


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 244  TSLNMSFNFSSVASYG 197
            +S N S+NFSSV+  G
Sbjct: 1046 SSSNPSYNFSSVSGDG 1061


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,278
Number of Sequences: 438
Number of extensions: 2968
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)