Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e02r
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)                   27   0.59 
SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         30   2.2  
SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)                  28   6.7  
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
          Length = 290

 Score = 27.1 bits (57), Expect(2) = 0.59
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 611 VNNLIIDKRRNTMEYCYKLWVGNGQDIV 528
           +++L++  +++   YC+     NGQDIV
Sbjct: 130 IHDLLLSLQKHLFAYCHNATSNNGQDIV 157



 Score = 23.4 bits (48), Expect(2) = 0.59
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 530 VKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 378
           ++ YF     L+M+G    L+  + +L L        S  R+  G G D H
Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233


>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -1

Query: 446  LKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMS---- 279
            L+ GST   S++ IA       +T L S  F       R Y  AH T Y  YL +S    
Sbjct: 868  LESGSTLLASDDGIAPNKRTKVYTSLSSDVFY------RFYVYAHTT-YTTYLCLSVNAP 920

Query: 278  -TSTCNCNARDRVV 240
             T  C  N+RDRV+
Sbjct: 921  CTQACRLNSRDRVL 934


>SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 183 VRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRW 82
           V +RRP       IQR L +  DR+ LGR Q RW
Sbjct: 9   VIRRRPGGKAFTCIQRFLSSTNDRDLLGRQQSRW 42


>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = +2

Query: 545 CRPTACSSTPWCSVSCQ*SDC*LHFERCCPGLGSRIPSSYVQHCRSHR*GCCCT 706
           C+   CS++  C  SC    C L+          +   + V  C+S   G  CT
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCT 277


>SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)
          Length = 309

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 156 LQPRIQRCLGA-RYDRERLGRPQGRWT 79
           LQPRI RC GA RYD  +  R  GR T
Sbjct: 210 LQPRISRCPGARRYDMHK-ARESGRET 235


>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1806

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -1

Query: 521  YFPLSFRLIMAGN--YVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFIT 348
            YFP   RLI       +     NY LA+ LG + + S   +  G+ VD+      W F  
Sbjct: 1387 YFPHMARLIDGQKPWCMSSSSSNYWLAIDLGVSVDVSAVEVK-GNDVDEDINQWIWDFSV 1445

Query: 347  LWENNRVYFKAH 312
             + N+ V +K H
Sbjct: 1446 EYSNDYVQWKQH 1457


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,037,995
Number of Sequences: 59808
Number of extensions: 429614
Number of successful extensions: 1550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)