Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11e01r
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       94   5e-20
07_03_1662 + 28447419-28447666,28448429-28448573                       92   2e-19
09_02_0195 + 5643549-5645090                                           31   0.64 
09_04_0430 + 17502387-17503505                                         28   4.5  
08_02_1012 + 23550314-23551504                                         28   4.5  

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 49/110 (44%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
 Frame = -3

Query: 322 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEG-KTNNLSNHVVVARDKTKVAITADIP 146
           ++ F IDC  P +D I+++ + EK+L+E +KV G K  NL   V V+RDKTKV +T+D P
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSDGP 80

Query: 145 FSXXXXXXXXXXXXXXXXXRDWLRVVASAHD--AYELRYFNINADSDNED 2
           FS                 RDWLRV+AS  D   YELRYFNI A+++ E+
Sbjct: 81  FSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNI-AENEGEE 129


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 91.9 bits (218), Expect = 2e-19
 Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
 Frame = -3

Query: 322 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEG-KTNNLSNHVVVARDKTKVAITADIP 146
           ++ F IDC+ P ED I+++ + EK+L+E +KV G K  NL + V V RDKTKV +T+D  
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGA 79

Query: 145 FSXXXXXXXXXXXXXXXXXRDWLRVVASAHD--AYELRYFNINADSDNED 2
           FS                 RDWLRV+A+  D   YELRYFNI A+++ E+
Sbjct: 80  FSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNI-AENEGEE 128


>09_02_0195 + 5643549-5645090
          Length = 513

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 351 ILPPFTPFLPVFWCNWAFLAT 413
           ILPP  P LP+ W +W  LAT
Sbjct: 152 ILPPSNPTLPMQWIDWEALAT 172


>09_04_0430 + 17502387-17503505
          Length = 372

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 357 PPFTPFLPVFWCNWAFLATGF 419
           PP  P   +++C W F   GF
Sbjct: 270 PPIVPGTDMYYCTWGFFPVGF 290


>08_02_1012 + 23550314-23551504
          Length = 396

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 357 PPFTPFLPVFWCNWAFLATGF 419
           PP  P   +++C+W F   GF
Sbjct: 264 PPIVPGTDMYYCSWGFFPMGF 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,266,900
Number of Sequences: 37544
Number of extensions: 198754
Number of successful extensions: 550
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)