Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d23f
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 100 3e-22
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 65 8e-12
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 64 2e-11
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 52 8e-08
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 49 6e-07
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 45 7e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 45 9e-06
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 1e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 2e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 44 2e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 44 2e-05
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 43 3e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 43 3e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 41 1e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 41 1e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 1e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 1e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 41 1e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 39 5e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 39 6e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 38 0.001
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 38 0.001
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 37 0.002
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.006
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 36 0.006
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.006
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.010
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.013
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.018
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 32 0.054
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 32 0.071
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 31 0.094
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 30 0.22
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 30 0.22
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 30 0.29
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 29 0.67
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 28 0.88
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 28 1.2
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 2.0
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 2.0
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 3.5
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 4.7
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 6.2
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 25 8.2
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 99.5 bits (237), Expect = 3e-22
Identities = 44/81 (54%), Positives = 59/81 (72%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G++Y+G +PHGFYE QM YFSQFG V R+ R+R+TG SK YAF+EF VA +VAE
Sbjct: 105 GVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAE 164
Query: 402 TMNNYLMGKRLIKAAYIPPDK 464
TM+NYL+ +L++ IP D+
Sbjct: 165 TMHNYLLYGKLLQCKVIPEDQ 185
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 64.9 bits (151), Expect = 8e-12
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+VY+G+IP+ E Q+ F Q G V + +++ +G+ KGY F E+HDPA A
Sbjct: 6 VVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 405 MNNYLMGKRLIKAAYIPPDKRR 470
+NNY G R ++ + D+ R
Sbjct: 66 LNNYDAGTRRLRVDFPTADQIR 87
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 63.7 bits (148), Expect = 2e-11
Identities = 32/109 (29%), Positives = 53/109 (48%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+V++G+IP+ E QMT+ F+Q G V +++ TG KGY F EF D +
Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRK 67
Query: 405 MNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNA 551
+NN +G R I+ + D RR Y + + + + + YN+
Sbjct: 68 LNNSELGPRKIRVEFPSNDPRR-NQSYEYTERTDRYMEQQNAHESSYNS 115
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 51.6 bits (118), Expect = 8e-08
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G++ E + FS+FG + ++R + TG+SKG+AF+++ D + + M
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 408 NNYLMGKRLIK----AAYIPPDKRR 470
N + RL++ A+Y P K +
Sbjct: 93 TNVKLLDRLVRVDHVASYKVPQKEK 117
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 48.8 bits (111), Expect = 6e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G + + + YF QFG V +C V+R TGRS+G+ F+ F +P V
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 402 TMNNYLMGKRLIKAAYIPPDKR 467
+ ++L GK + IP +++
Sbjct: 222 SKEHHLDGKIIDPKRAIPREEQ 243
Score = 39.1 bits (87), Expect = 5e-04
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 389
+++G +P E + +F+QFG V + ++ + TGR +G+ FV + + + +
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 45.2 bits (102), Expect = 7e-06
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +3
Query: 267 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAA 446
Q+ + FS+FG + +C + T SKGY FV F P A T+N L GK+ +
Sbjct: 436 QLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVN 495
Query: 447 Y 449
Y
Sbjct: 496 Y 496
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKG------YAFVEFHDPAVAQ 389
+Y+G++P + + F FG S ++ SR+ +S +AF+ F + A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHML-SRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 390 IVAETMNNYLMGKRLIKAAY 449
++N +K Y
Sbjct: 81 NAIASLNGSSFQGNTLKVEY 100
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 44.8 bits (101), Expect = 9e-06
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G++P + + F+ G V R I TGRSKG+ V+F + A E +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRAR-IAYEPTGRSKGFGVVQFENENDAASSIEKL 340
Query: 408 NNYLMGKRLIKAAY 449
N Y G R ++ +Y
Sbjct: 341 NGYRYGGRPLQLSY 354
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/81 (27%), Positives = 42/81 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++ + ++ ++ Q G V NC ++ + G SKG A +E+ A+ +T+
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 408 NNYLMGKRLIKAAYIPPDKRR 470
+N RL+ YI D+ +
Sbjct: 127 SNQKFMGRLV---YIREDREQ 144
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 44.4 bits (100), Expect = 1e-05
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL-I 437
E Q+ F+ FG V N + RRTG KGYA +E+ AQ + N L+ ++L +
Sbjct: 23 EEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKLEV 82
Query: 438 KAAYIPPDKR 467
A++ P +R
Sbjct: 83 DFAFLEPPER 92
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 440
E ++ F +FGG+ + + + TGR+KG+AFV ++D A + ++ Y +++
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILR 274
Query: 441 AAYIPP 458
+ P
Sbjct: 275 CEFSKP 280
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 43.6 bits (98), Expect = 2e-05
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAET 404
V++ + + ++ +F Q G V + +++R + +GRSKG A+VEF H+ +V +A
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-- 299
Query: 405 MNNYLMGKRLI 437
L GKRL+
Sbjct: 300 ----LSGKRLL 306
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 389
V++G + + + Q F ++G + RVI ++GRSKGY +V+F P A+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Score = 34.7 bits (76), Expect = 0.010
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G++ E ++ F G + + R+ ++GR KG+ +V F D A+ E
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 408 NNYLMGK 428
+++ G+
Sbjct: 428 GHFIAGR 434
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/71 (25%), Positives = 41/71 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++ + ++ +F+ G V+ ++ + TG KG+A++EF +P++ A +
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVP-NALLL 115
Query: 408 NNYLMGKRLIK 440
N ++ +R +K
Sbjct: 116 NGSMLHERPLK 126
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 440
+ +T +FS G + + V+ + TG ++GY FV F AQ A+ + N + R+++
Sbjct: 18 QDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILR 77
Query: 441 AAYIPPDKR 467
+ P KR
Sbjct: 78 LDFATPRKR 86
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQI 392
+Y+ ++P E Q+ + FG + + ++I++ G SKG+ F EF +P+ A++
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM 422
FS+FG + +C+VIR + TG S YAF+EF + + M N L+
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLI 310
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 41.1 bits (92), Expect = 1e-04
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 377
++++G++P + +F + G V + R+ + +GR KGYAFVEF +P
Sbjct: 93 ILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + E + + F+ G V++ RV R T RS GYA+V FH+ + + +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 408 NNYLMGKR 431
N L+ R
Sbjct: 142 NYTLIKGR 149
Score = 35.1 bits (77), Expect = 0.008
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G V++ ++ + FS FG + +C+V G +KGY FV F A E
Sbjct: 168 GNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIE 226
Query: 402 TMNNYLMGKRLI 437
+N L+ + +
Sbjct: 227 HVNGMLLNDKKV 238
Score = 33.1 bits (72), Expect = 0.031
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAETMNNYLMGKRLI 437
+ ++ FS FG +++ +++ + G+SKG+ FV + P A + V E L GK L
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLY 435
Query: 438 KAAYIPPDKRR 470
A + RR
Sbjct: 436 VALAQRKEVRR 446
Score = 32.7 bits (71), Expect = 0.041
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ ++ E + + F QFG +++ +++ + + +G+ FV + + AQ + +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 408 NN-YLMGKRL 434
N+ GK+L
Sbjct: 322 NDKEYKGKKL 331
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
++L + + E + + F+++G + RV+R++ TG+S GYAFV F ++ +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 408 NNYLM-GKRLI 437
++ G+R++
Sbjct: 162 AGLMLNGRRIV 172
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.1 bits (87), Expect = 5e-04
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
V++G++ E + +YF G + R++R +T KG+A+++F D
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 38.7 bits (86), Expect = 6e-04
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 267 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 437
Q+ FS FG + + + +G SKGY FV F A +T+N ++GK+ I
Sbjct: 399 QLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRI 455
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G++ E + FS G + + GRSKGY FV + A E M
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 408 NNYLMGKRLIKAAY 449
NN + + I +Y
Sbjct: 161 NNQFLMNKPITVSY 174
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + Q ++ G ++IR+R TG + GY FVEF P A A +M
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEAS-SAMSM 153
Query: 408 NN 413
NN
Sbjct: 154 NN 155
Score = 32.3 bits (70), Expect = 0.054
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYF-SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G + E + F S++ + +++ +T S+GY FV F D +
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 405 MNNYLMGKRLIKAAYIPPDKR 467
M + G R I+ P +
Sbjct: 248 MQGQICGDRPIRVGLATPKSK 268
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ I E ++ Q FS+FG V++ R++R T S+G+ F+ F A + +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 408 NN 413
N+
Sbjct: 163 NS 164
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.5 bits (78), Expect = 0.006
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
++++G++ + + ++F Q G + R++ TG+ KG+ FV+F D
Sbjct: 229 ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 35.5 bits (78), Expect = 0.006
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+ + +IP + + +F Q G G +G AF F+ P AQ+V +T+
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263
Query: 408 NNY-LMGKRL 434
N Y + G+RL
Sbjct: 264 NGYEINGRRL 273
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 35.5 bits (78), Expect = 0.006
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G++ + + + Q FS++ + +V+R R G+++G+ FV F D
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREK 90
Query: 408 NNYLMGKRLIKAAYIPPD 461
N +G R +K + D
Sbjct: 91 NGKYIGSRPVKLSRATSD 108
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 34.7 bits (76), Expect = 0.010
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G++ E + F FG + + + R + + YAFVEF +P A+ E M
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENM 66
Query: 408 NNYLMGKRLIKAA 446
N ++ R I+ +
Sbjct: 67 NYSILCDRCIRVS 79
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 34.3 bits (75), Expect = 0.013
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ +P + + Y ++FG VS+ + I T KGY F F + A I M
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
Score = 30.7 bits (66), Expect = 0.16
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++P + E ++ F +SN RV+R + +S+G F D A+ +
Sbjct: 386 LYISNLPLHWNESDISTLFKPSKIISN-RVLRDSKE-QSRGVGFARMQDRKTAEDIINKF 443
Query: 408 NNYLMGKRL 434
NN+++ L
Sbjct: 444 NNFVLDPAL 452
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.9 bits (74), Expect = 0.018
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
++L ++ + E + F FG + + ++T KG+A+++FHD
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 32.3 bits (70), Expect = 0.054
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGV--------SNCRVIRSRRTGRSKGYAF----VE 365
G++YL IP +++ Q SQ+G + S+ + + R G +K + +E
Sbjct: 122 GVIYLSRIPPYMAPNKLRQILSQYGKIGRVYLTPESSAKRAQRLRNGGNKRVMYEEGWIE 181
Query: 366 FHDPAVAQIVAETMNNYLMGKRLIKAAYIPPDKRRWAMRY 485
F VA+ VAE +N +G + K+++ D W M+Y
Sbjct: 182 FESKRVAKSVAELLNTNQIGGK--KSSWYHDD--IWNMKY 217
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 31.9 bits (69), Expect = 0.071
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++G++ E+ + +F + GV++ R++ T RS+G+ +VEF
Sbjct: 97 HVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSG 154
Query: 411 NYLMGK 428
LMG+
Sbjct: 155 EDLMGR 160
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 31.5 bits (68), Expect = 0.094
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 336 GRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRL 434
G +G AF FH P A+ V + +N Y + G+RL
Sbjct: 270 GVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRL 303
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 30.3 bits (65), Expect = 0.22
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 228 VYLGHI-PHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+Y+G I P E ++++F+++G + RV+ SR G AF+ + + A AQ E
Sbjct: 176 LYVGGITPTDDIEEIVSRHFAEWGDIERIRVLNSR------GIAFITYLNEANAQFAKEA 229
Query: 405 M 407
M
Sbjct: 230 M 230
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 30.3 bits (65), Expect = 0.22
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVI-RSRRTGRSKGYAFVEF 368
+Y+G + + FS+FG VSN +I +S G + +A++ F
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 29.9 bits (64), Expect = 0.29
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAET 404
V+LG++P+G E ++ + FG + +++ R AFV F + A A + V E
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER------NIAFVHFLNIAAAIKAVQEL 261
Query: 405 MNNYLMGKRLI 437
N KR I
Sbjct: 262 PLNPKWSKRRI 272
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 28.7 bits (61), Expect = 0.67
Identities = 19/75 (25%), Positives = 29/75 (38%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
++ L +IP +TQ F F G R++ RR G AFVE+ A +
Sbjct: 175 VLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRR-----GIAFVEYDSDREATVAKNG 229
Query: 405 MNNYLMGKRLIKAAY 449
+ IK +
Sbjct: 230 TTGMSLSGNQIKVTF 244
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 291 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNY-LMGKRLI 437
FG +++R+T R +G AFV F + A + + Y L GK ++
Sbjct: 50 FGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMM 99
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 28.3 bits (60), Expect = 0.88
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 572 FFSITLYCVVLFFKFQIRI*DRIVLRVPCVS 480
FFS+ YC VLF +F ++ LRVP S
Sbjct: 74 FFSVVTYCFVLFLQFA----EQSTLRVPMAS 100
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 398 SNNLCDSRIMKLYKCISFRSASAP*SDHSTVRNTSKLTEVLCHLMLIKSMWD 243
+NN DS I K+ + SFR P ST R+ TE + H++ +++D
Sbjct: 201 TNNSLDSSIRKIIRMQSFRGPLEPFKYSSTTRHKVS-TESIFHVLHAFTLFD 251
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 389
+Y+ G ++ F FG + C I RT S+ +AFVE+ D A+
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCD-IPIPRTRTSRPFAFVEYEDSRDAE 61
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 4 LFTLLSFCLNHILNYEIKWKKTLRWILANKKS 99
L T++ F + + + + KW+K L +AN+K+
Sbjct: 104 LITVMGFAMLRVSHLQEKWRKKLMKSIANRKA 135
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +3
Query: 264 HQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIV 395
H + Q F G+S V+ R +K Y + E P ++ ++
Sbjct: 487 HSLAQQFPSALGISFISVVEGMRKRLAKSYVYPEIKFPEISDLL 530
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 450 IPPDKRRWAMRYTWNPQ-NNPVLNTNLKLKKQYNAVKSDAEELRSAR 587
+P WAM W+P NN + + ++YN + S E +RS +
Sbjct: 392 VPKGVPPWAMSACWSPDGNNIYIGRRNGIVEEYN-IHSGKEPVRSLK 437
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 348 GYAFVEFHDPAVAQIVAET 404
G AF+ F A AQIVA+T
Sbjct: 388 GQAFITFESMATAQIVAQT 406
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 FYEHQMTQYFSQFGGVSNCRVIRSR---RTGRSKGYAFVEFHDPAVAQIVAETMNNYL 419
FYE + + FG V + R RSK Y F + P ++ + E ++ +L
Sbjct: 239 FYEIESSTVIGVFGVVEYLKKAEKRFEEEKERSKNYLFTKIASPLLSVVEDELLSKHL 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,959
Number of Sequences: 5004
Number of extensions: 40979
Number of successful extensions: 185
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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