Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d23f
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 97 1e-20
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 57 1e-08
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 48 6e-06
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 46 2e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 46 2e-05
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 45 4e-05
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 45 4e-05
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 44 9e-05
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 44 1e-04
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 42 4e-04
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 40 0.002
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 40 0.002
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.003
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 39 0.003
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.006
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.006
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 37 0.014
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 36 0.025
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 36 0.025
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 35 0.043
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 35 0.057
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 34 0.075
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.075
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.099
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 31 0.53
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 31 0.70
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 31 0.70
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 31 0.92
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 30 1.2
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 2.8
SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1) 29 2.8
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 29 3.7
SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11) 29 3.7
SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_14792| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1) 28 6.5
SB_54033| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 8.6
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 96.7 bits (230), Expect = 1e-20
Identities = 41/73 (56%), Positives = 59/73 (80%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G++YLGHIPHGF+E+++ ++F QFG V+ R+ RS+++ RSKGYAFVEF VA+I A+
Sbjct: 98 GVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAAD 157
Query: 402 TMNNYLMGKRLIK 440
TM+NY+M RL+K
Sbjct: 158 TMHNYMMFGRLLK 170
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G+IP+ E Q+ + FS+ G V + R++ R TG+ KGY F E+ D A +
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 408 NNYLMGKRLIKAAYIPPDKRR---WAMRYTWNPQNNP 509
N Y + R ++ +K + +M T P+ +P
Sbjct: 87 NGYELNGRALRVDSAASEKNKEEIKSMEMTARPEVSP 123
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +3
Query: 234 LGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 413
+ ++P + + + F G V++C++IR R TG+S GYAFV + +P A MN
Sbjct: 31 INYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNG 90
Query: 414 YLMGKRLIKAAYIPP 458
+ + +K ++ P
Sbjct: 91 ARLQNKTLKVSFARP 105
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Frame = +3
Query: 234 LGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 413
+ +IP + F ++NC+++R + +G S G+ FV+++ AQ + +N
Sbjct: 51 VNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNG 110
Query: 414 YLMGKRLIKAAYIPP--DKRRWAMRYTWN-PQNNP 509
+ +G +++K A+ P D + A Y N P+ P
Sbjct: 111 FTIGNKVLKVAFSRPGGDNTKGANLYVCNIPKQLP 145
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ +IP E + + F +G + NCR++R + TG KG FV + A AQ ++
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSL 194
Query: 408 N 410
+
Sbjct: 195 S 195
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/81 (22%), Positives = 39/81 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ +I + + +T F Q G V+ ++ + + KG+ FV AQ +T+
Sbjct: 277 LYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTL 336
Query: 408 NNYLMGKRLIKAAYIPPDKRR 470
N ++ + ++++ I RR
Sbjct: 337 NGFMYTNKPLQSSRIRTLNRR 357
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P+ E Q+ + S FG + +++ TG SKGYAF E+ D + + + +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 408 NNYLMG-KRLI 437
N +G K+LI
Sbjct: 735 NGMQLGDKKLI 745
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + E + F FG V + ++I T RSKGY FV+F + A+ E M
Sbjct: 244 LYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQM 303
Query: 408 NNYLMGKRLIK 440
N + + R +K
Sbjct: 304 NGFELAGRPLK 314
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V+ + + ++FS+ G VS+ R+I R + RSKG A++EF D + +
Sbjct: 148 VFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLAIGLS 207
Query: 408 NNYLMG 425
L+G
Sbjct: 208 GQKLLG 213
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF----HDPAVAQI 392
L+++G++P F E Q S +G + ++RS TG SKGY FVE+ + Q
Sbjct: 114 LLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQ 173
Query: 393 VAETMNNYLMGKRLIKAAY 449
+ T + Y+ G R+++ A+
Sbjct: 174 LLNTASKYI-GGRILRVAF 191
Score = 30.7 bits (66), Expect = 0.92
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMT-QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++ +P F + + FSQ G V+ +V + G S+G+AFV++ A+
Sbjct: 207 LFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRA 266
Query: 405 MNNYLMGKRLIKAAYIPPDK 464
N + I+ AY P +
Sbjct: 267 HNGRQVEGSNIRVAYGSPGR 286
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G IP+ + + ++F+QFG + VI+ R T +SKGY FV A++ +
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNK 71
Query: 408 NNYLMGKRL-IKAAYI---PPDKRRWAMRYT 488
+ G++ + AY+ P R MR T
Sbjct: 72 RPMIEGRQANVNLAYLGAKPKPTRGLCMRLT 102
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ + E + F FG V +C + + TG+ KGY F+E+ + A +M
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASM 260
Query: 408 NNYLMGKRLIKA--AYIPPDKRRWAMRYTWNPQNNP 509
N + +G + ++ A PP A T P P
Sbjct: 261 NLFDLGGQFLRVGRAITPPTSSAMAAINTTPPGTLP 296
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G I E + F FG ++ + + KG+AFVE+ P AQ+ E M
Sbjct: 104 VYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQM 163
Query: 408 NNYLMGKRLIK 440
N L+G R IK
Sbjct: 164 NGVLLGGRNIK 174
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKG-----YAFVEFHDPAVAQIVAETMNNYLMG 425
EH++T S+FG VS VI + G + FVEF P ++ G
Sbjct: 514 EHEVTDECSKFGTVSRV-VIYKEKQGEEEDAEVIVKIFVEFTSPDETDKATSNLDGRWFG 572
Query: 426 KRLIKAAYIPPDK 464
R +KA DK
Sbjct: 573 GRAVKAEAYNEDK 585
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G++P E + + F+ G V + R+IR R+TG KG+ +V F + A + A M
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLF-ESKDAVVFALKM 116
Query: 408 NN 413
NN
Sbjct: 117 NN 118
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++P+ + + F ++G V ++R + T S+G AF+ F D AQ +
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAV 71
Query: 408 NNYLMGKRLIK 440
N M R IK
Sbjct: 72 NKKQMFGRTIK 82
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 437
+ Q+F +FG + C V+R T RS+G+ F+ F DP +V + L GK+++
Sbjct: 124 LRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKMV 179
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/94 (26%), Positives = 44/94 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ ++P E ++ + FS+ G V R++ + R G+ KGY +VE+ + A T+
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLV-TNRAGKPKGYGYVEYEQESSASTAVLTL 231
Query: 408 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNP 509
+ + R I A P RR R P P
Sbjct: 232 DKTEVKGRTISVALSNPPTRRGPPRQEHPPPPPP 265
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 44.0 bits (99), Expect = 9e-05
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD-PAVAQIVAET 404
V++ ++ + +T F QFG ++ C+V+ T SKG AFV++ +V Q +A T
Sbjct: 418 VFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAAT 477
Query: 405 MNN----YLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQ 542
+ +L G RL + P K R + +P NL L ++
Sbjct: 478 DEDSEGLFLDGNRLQVDLAVTPGKLEQMSRQQKEERRDPKDKRNLYLARE 527
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 437
FS+FG + +C VIR ++TG S YAF+EF + M+N L+ R I
Sbjct: 140 FSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKMDNVLIDDRRI 191
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
L+ LG +P+ E +M +YF++FG + C V T RS+G+ FV F A+ V T
Sbjct: 117 LIVLG-LPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLST 175
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPA-VAQIVAET 404
+++G +P E + +YF+QFG V++ + + R + FV F A I E
Sbjct: 201 LFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFR-----HFGFVTFASVANCVSIAFEN 255
Query: 405 MN 410
MN
Sbjct: 256 MN 257
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
++++ +I E + + FS +G + N V RRTG KGYA VE+ AQ E
Sbjct: 294 ILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEA 353
Query: 405 MNN-YLMGKRL-IKAAYI--PPDKRRWAMRYTWNPQNNPVLN 518
+N ++G+ + + A+I P K R T P + + N
Sbjct: 354 LNGAEMLGQNISVDWAFIRGPSKKSRSLQAVTSLPLSKRIAN 395
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 246 PHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYL 419
P F + + F FG + +++R +T +KGY +V+FH + A + E + L
Sbjct: 61 PKDFNDEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALENCDKSL 118
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G IP YE ++ F G + R++ G+++GYAFV + A+ +T+
Sbjct: 76 VFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFN-GQNRGYAFVVYTSKDDAKRCVKTL 134
Query: 408 NNYLMGK 428
NNY + K
Sbjct: 135 NNYEIRK 141
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G++ E ++ Q F +FG V ++R + +GRS+G+ FV E M
Sbjct: 11 LYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKM 69
Query: 408 NNYLMGKRLIKAA 446
N +G R I A
Sbjct: 70 NQSSVGGRNITVA 82
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ H+ + + + FS +G V + R S+G+A+VE+ DP + + M
Sbjct: 1159 LYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHM 1218
Query: 408 N-NYLMGKRLIKAAYIPPDKR--RWAMRYTWNPQNNP 509
+ + G+ + + +PP R R A R P+ P
Sbjct: 1219 DGGQIDGQEIAVQSVLPPRPRDVRPAYRRPSPPRRRP 1255
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 39.5 bits (88), Expect = 0.002
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 377
++ G + + +T+ F+++ +++R +++ +SKGY FV F DP
Sbjct: 219 IFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDP 268
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNC-RVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G++ E + FS FG + +++R TG SKG+AF+ F + E
Sbjct: 102 LFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEA 161
Query: 405 MNNYLMGKRLIKAAY 449
MN + R I +Y
Sbjct: 162 MNGQYLCNRPITVSY 176
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + E + + F Q G V N + + R T +GY FVEF A + M
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVM 74
Query: 408 N 410
N
Sbjct: 75 N 75
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/79 (24%), Positives = 40/79 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + YFSQ+G + +C ++ +R GRS+G+ FV + V +
Sbjct: 52 IFIGGLNWNTTEEGLKDYFSQWGTIVDCVIM--KRDGRSRGFGFVTYESSDSVNEVLKKK 109
Query: 408 NNYLMGKRLIKAAYIPPDK 464
++ L + + +P D+
Sbjct: 110 DHVLDDREIEPKRSVPRDE 128
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G +P +E ++ F + G + + R++ +G +KG+AF F + AQ + +
Sbjct: 154 VFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKL 213
Query: 408 NNYLM--GKRL 434
+N + GKRL
Sbjct: 214 DNKEIRPGKRL 224
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
V++G + G E + YF QFG V + R++R+ G S+ Y FV F D
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESVRIMRT-FLGYSRNYGFVLFKD 129
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP-AVAQIVAET 404
+++ ++ E + +YF +G V+ ++ R TG+SKG V+ P V +I+ E
Sbjct: 321 LFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEP 380
Query: 405 MNNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKL 533
+ +++GK ++ +R +R T N + ++N +L L
Sbjct: 381 V--HVIGKSQVRLR-----RRGLKIRPTRNTDDLSLMNFSLSL 416
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVE 365
++Y+G +P F E + ++F +FG + + I + G G E
Sbjct: 158 VIYVGGLPSHFTEQTVREHFKKFGVIEAVKFIENTSVGAKTGXXXXE 204
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP---AVAQIVA 398
+Y+G + E + + FS G V + RV R T RS GYA+V F P A + +A
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHDAALEAIA 74
Query: 399 ETMNNYLMGKRLIKAAYIPPDKR 467
L K++ ++ +R
Sbjct: 75 RVDGMLLNDKKVFVGRWMSKKER 97
Score = 34.3 bits (75), Expect = 0.075
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ + + QM + ++ G + + +V+ G+SKG+ FV F P A+ +
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAVNVL 169
Query: 408 NNYLMGKRLIKA 443
N +G R + A
Sbjct: 170 NGKEIGGRRLWA 181
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 291 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIPP 458
F G SN +VI R +G S+G+ FV++ D A+ V M + R ++ + P
Sbjct: 309 FEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFASP 364
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
V+LG++ E + +F + G + CRVI GRS+G+ + +F
Sbjct: 182 VFLGNLSFDADEETLAAFFEEKGLSATCRVITQE--GRSRGFGYADF 226
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 291 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIK 440
+G + N ++R ++TG+ KG+ F+ + D + + N +G R I+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIR 51
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIV 395
G +++G + + + + +YFS++G + + TGR +G+AFV+F + A +
Sbjct: 29 GKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADAI 86
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 386
E ++ +F ++G V +++R + G SKGYAF+ F VA
Sbjct: 21 ESELRAFFEEYGVVKESKIVRDKH-GVSKGYAFITFESQEVA 61
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 389
VY+G++P E + F ++G +++ +++RR G +AFVEF DP A+
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVD-LKNRR-GAGPPFAFVEFEDPRDAE 314
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAET 404
VYLG +P+G E + ++F +G R R Y FVEF D A V E
Sbjct: 5 VYLGRLPYGTTEDDVRRFFRSYG--------RLRDINLKNNYGFVEFEDDRDADDAVYEC 56
Query: 405 MNNYLMGKRLI 437
++G+R++
Sbjct: 57 NGKEMLGERIL 67
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRLI 437
+ Q F ++G + + + R R T S+G+AFV F++ A+ + M+ LM ++ +
Sbjct: 32 LKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDATCLMAEKFV 88
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
+ + FS+FG V + R + G KG+AF+EF A+ V + N
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFN 150
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 34.3 bits (75), Expect = 0.075
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V L +IP E Q+ ++FS G +++ + + +T KG+ V F A V +
Sbjct: 123 VILKNIPSSIGESQILEHFSSSGEIASVYIPENLKTKERKGHCIVTFASVTEAFEVVKKR 182
Query: 408 NNYLMGKRLIKAAYI 452
+++ G +I Y+
Sbjct: 183 KHHIHGYDIITEYYM 197
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGG-VSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIV 395
+++G + E + +YFS G V + + IR+ +G+SKG+AFV + V
Sbjct: 44 IFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRTL-SGKSKGFAFVRLRKKEAVESV 99
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G IP E ++ + G + R+ TG +KG+AF F + A T+
Sbjct: 155 VFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAITTL 214
Query: 408 NN 413
N+
Sbjct: 215 ND 216
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
E ++ +FS FG V++ R++ RRTG +KG A + D + V + +
Sbjct: 1079 ELELETFFSNFGPVADVRIVCDRRTGLNKGDAQPKCRDELAKRTVLKNV 1127
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 386
+V L +P+G + ++ Q+F+ V N I G++ G FVEF P +A
Sbjct: 39 VVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFVEFASPEIA 92
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFV 362
VY+G++P ++++ Q FSQ+G + +V KGYAF+
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVF------ADKGYAFI 655
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 285 SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 437
S G + N R+ + TG+ + + FVEF P +E ++ + R I
Sbjct: 478 SNAGPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAI 528
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+ Q FSQFG V V+ R GRSKG+ VEF
Sbjct: 142 LEQAFSQFGDVERAVVVCDVR-GRSKGHGIVEF 173
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 31.5 bits (68), Expect = 0.53
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 291 FGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
+G + N ++R ++TG+ KG+ F+ + D + + N
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFN 41
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFV 362
Y+G++ + E + + F V + RVI R TGR +G+ FV
Sbjct: 85 YIGNLSYSVDEQALEEKFHDCN-VVDVRVITDRETGRPRGFGFV 127
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 389
+Y+ + + F +G + + +IR++ TG+SKG+ +V + + AQ
Sbjct: 65 IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQ-TGKSKGFGYVTYENAESAQ 117
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 30.7 bits (66), Expect = 0.92
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ-IVAET 404
+Y+ + + + + ++G + + + I + T KGY FV+F P AQ VA
Sbjct: 102 LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAAL 161
Query: 405 MN 410
+N
Sbjct: 162 VN 163
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
++++G++P ++ +F + G S+ R++ + SKG F+E D
Sbjct: 75 ILFVGNLPFDLTTEKVLDHF-RCAGSSSFRLLTKKTDNSSKGCGFLEIDDSIGYTKALNL 133
Query: 405 MNNYLMGKRL 434
++YL G+++
Sbjct: 134 HHSYLGGRKI 143
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIV 395
+++G + + +YF +G +++ VI T +S+G+ +V F D V + V
Sbjct: 16 LFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNV 71
>SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
++L ++ + E + + F +F +++ GR KG AFV F D VA +
Sbjct: 116 LFLKNLSNKVKEEDLIRLFLRFQQNGAPKLVFRLMKGRMKGQAFVTFPDSEVAIKAHSLV 175
Query: 408 NNY-LMGKRLI 437
N Y L G+ +I
Sbjct: 176 NGYRLKGRPVI 186
>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 513 RQDCSEGSMCISWPIFVYQVVCKQLLSIFS 424
R+DC GS C P + V CK LLS ++
Sbjct: 595 RRDCPAGSFCHIHPTDRFAVCCKDLLSSYT 624
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 327 RRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYIP 455
RR KG+ FV F DPA + V + L GK + +P
Sbjct: 136 RRARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVP 178
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
VYLG +P+G E + ++F +G + R GY FVEF
Sbjct: 5 VYLGRLPYGTREDDVKKFFYTYGR------FKIREIILKDGYGFVEF 45
>SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1)
Length = 51
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 336 GRSKGYAFVEFHDPAVAQ 389
GRSKGYA+VEF++ + Q
Sbjct: 3 GRSKGYAYVEFNNESTVQ 20
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
E + + F G +S + + + T +SKG+AF+ F
Sbjct: 194 ESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINF 229
>SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)
Length = 502
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 483 ISWPIFVYQVVCKQLLSIFSP*DNYSWSQQQFVRQQDHETL 361
+ W +FV + LS+FS WS + F R ++ + L
Sbjct: 1 MKWWVFVICTITTNFLSVFSKTHEVEWSTEFFQRSKNEKVL 41
>SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 131 YKEEKNASEGSDPR-HP*STRRENKKKETCKRA 226
Y+EE++ASEG + HP R+ +K+ T A
Sbjct: 110 YEEEESASEGQEANPHPPRGRKRKRKRPTASTA 142
>SB_14792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 206 KETCKRACLFGTYPTWIL*ASNDTILQSVW 295
K TC+RAC+F + + +N +L VW
Sbjct: 52 KRTCRRACIFVCVLSVVAIVTNSIVLLVVW 81
>SB_25792| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 440
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 299 TSKLTEVLCHLMLIKSMWDMSQINKPSY 216
TS ++CH WD S+I++PSY
Sbjct: 132 TSSYGPLVCHKSTQTPTWDESEIDEPSY 159
>SB_54033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 492 NPQNNPVLNTNLKLKKQYNAVKSDAE 569
N NN +N+N +KK Y VK ++E
Sbjct: 17 NRSNNNTINSNSFMKKAYTLVKEESE 42
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 437 YQSFPHEIIIHGLSN-NLCDSRIMKLYKCISFR 342
Y +F EIII G+SN LC+ + L+ C+SF+
Sbjct: 693 YAAFIVEIIIKGISNVELCNPLTLILF-CLSFK 724
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY G +P E + ++ +G R R GY FVEF D A +
Sbjct: 7 VYFGRLPRDCRERDLEKFVRGYG--------RVREISMKLGYGFVEFDDYRDADDCVYDL 58
Query: 408 N-NYLMGKRLI 437
N L+G+R I
Sbjct: 59 NGRNLLGEREI 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,051
Number of Sequences: 59808
Number of extensions: 287777
Number of successful extensions: 669
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -