Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d23f
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 81 8e-16
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 63 1e-10
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 61 5e-10
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 57 8e-09
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 55 3e-08
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 54 6e-08
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 50 2e-06
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 50 2e-06
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 50 2e-06
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 50 2e-06
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 48 4e-06
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 48 5e-06
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 48 7e-06
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 48 7e-06
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 47 9e-06
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 47 9e-06
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 47 9e-06
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 45 5e-05
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 45 5e-05
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 44 1e-04
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 43 1e-04
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 43 1e-04
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 43 1e-04
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 43 1e-04
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 43 1e-04
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 42 2e-04
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 42 2e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 42 2e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 42 2e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 42 2e-04
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 42 4e-04
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 42 4e-04
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 42 4e-04
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 42 4e-04
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 41 8e-04
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 41 8e-04
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 41 8e-04
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 40 0.001
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 40 0.001
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 40 0.001
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 40 0.001
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 39 0.003
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 39 0.003
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 38 0.005
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 38 0.005
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 38 0.005
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 38 0.005
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 37 0.009
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 37 0.009
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 37 0.009
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 37 0.009
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 37 0.009
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 36 0.016
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 36 0.016
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 36 0.016
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 36 0.028
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 35 0.037
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 35 0.037
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 35 0.037
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 34 0.086
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 34 0.086
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 34 0.086
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 32 0.35
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 32 0.35
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.46
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 31 0.80
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 31 0.80
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 31 0.80
U80455-3|AAO38606.1| 145|Caenorhabditis elegans Elav-type rna b... 30 1.1
U23484-17|AAK68296.1| 367|Caenorhabditis elegans Tudor domain p... 30 1.1
AF303251-1|AAG50209.1| 367|Caenorhabditis elegans 2F713 protein. 30 1.1
U56963-3|AAP31428.1| 312|Caenorhabditis elegans Serpentine rece... 29 2.4
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 29 3.2
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 29 3.2
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 29 3.2
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 29 3.2
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 29 3.2
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 28 4.3
AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical ... 28 4.3
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 28 4.3
U56963-4|AAB38117.2| 316|Caenorhabditis elegans Serpentine rece... 28 5.7
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 28 5.7
AF039053-5|AAC25875.2| 293|Caenorhabditis elegans Serpentine re... 27 7.5
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr... 27 9.9
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 27 9.9
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 27 9.9
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 27 9.9
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 27 9.9
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 80.6 bits (190), Expect = 8e-16
Identities = 39/87 (44%), Positives = 56/87 (64%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+V + IP GF+E ++ YF QFG V RV R+RRTG KG+A+V F + AVA+I AE+
Sbjct: 33 VVKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAES 92
Query: 405 MNNYLMGKRLIKAAYIPPDKRRWAMRY 485
MN YLM ++ + + P+ AMR+
Sbjct: 93 MNGYLMFEQRLGCTVMKPELIPKAMRH 119
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++P+ E ++ YF+ G V+N R++ R TGR +G+AFVEF + A AQ E +
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 408 NNYLMGKRLIKAAY 449
N R ++ Y
Sbjct: 68 NGVAFNGRNLRVNY 81
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 61.3 bits (142), Expect = 5e-10
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G+ P E + YFSQ G VSN R++ R TGR +G+AFVEF + A AQ +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 408 NNYLMGKRLIK 440
N R ++
Sbjct: 66 NGVDFNGRALR 76
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 57.2 bits (132), Expect = 8e-09
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G+ P E ++ +FS G ++N R++ R TGR +G+AF+EF + AQ E M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 408 N 410
N
Sbjct: 67 N 67
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/71 (30%), Positives = 41/71 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G+I + E + FS+ G V + +++ R TG+ KGY F+EF D A++ +
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 408 NNYLMGKRLIK 440
N Y + R+++
Sbjct: 80 NGYELSGRILR 90
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/75 (30%), Positives = 42/75 (56%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + + E + FSQ+G V N +IR + TG+SKG+AF+ + D + +
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 408 NNYLMGKRLIKAAYI 452
N + KR+I+ ++
Sbjct: 100 NGISLHKRMIRVDHV 114
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + ++ + F FG VS+ +VIR T +SKGY FV + A+ E M
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 408 NNYLMGKRLIK 440
N +G+R I+
Sbjct: 84 NGQWLGRRTIR 94
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G+I E ++ Q F+ FG ++ R+ + + GYAFV+F + A M
Sbjct: 130 VYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQM 182
Query: 408 NNYLMGKRLIKAAY 449
NN +G +L++ ++
Sbjct: 183 NNQDVGGQLVRCSW 196
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + ++ + F FG VS+ +VIR T +SKGY FV + A+ E M
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 408 NNYLMGKRLIK 440
N +G+R I+
Sbjct: 94 NGQWLGRRTIR 104
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G+I E ++ Q F+ FG ++ R+ + + GYAFV+F + A M
Sbjct: 140 VYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQM 192
Query: 408 NNYLMGKRLIKAAY 449
NN +G +L++ ++
Sbjct: 193 NNQDVGGQLVRCSW 206
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + ++ + F FG VS+ +VIR T +SKGY FV + A+ E M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 408 NNYLMGKRLIK 440
N +G+R I+
Sbjct: 197 NGQWLGRRTIR 207
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/71 (33%), Positives = 36/71 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G++ E + F+Q G V+ +VI G + YAFVEF D A +TM
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQALQTM 104
Query: 408 NNYLMGKRLIK 440
N L+ R +K
Sbjct: 105 NKRLLLDREMK 115
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G+I E ++ Q F+ FG ++ R+ + + GYAFV+F + A M
Sbjct: 243 VYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQM 295
Query: 408 NNYLMGKRLIKAAY 449
NN +G +L++ ++
Sbjct: 296 NNQDVGGQLVRCSW 309
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + ++ + F FG VS+ +VIR T +SKGY FV + A+ E M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 408 NNYLMGKRLIK 440
N +G+R I+
Sbjct: 165 NGQWLGRRTIR 175
Score = 37.5 bits (83), Expect = 0.007
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G+I E ++ Q F+ FG ++ R+ + + GYAFV+F + A M
Sbjct: 211 VYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQ------GYAFVKFDNKDAAAKAIVQM 263
Query: 408 NNYLMGKRLIKAAY 449
NN +G +L++ ++
Sbjct: 264 NNQDVGGQLVRCSW 277
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G ++L ++P+ E + F ++G VS +V+ ++TG KG+A VEF P A
Sbjct: 279 GRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYS 338
Query: 402 TMNNYLMGKRLIKAAYIPPDKRRW-----AMRYTWNPQNNPVLNTNLKLKKQYNAVKSDA 566
++ Y+ R++ +P D++R + +NP L K +K+ + K +
Sbjct: 339 ALDGYVFKGRMMH--ILPGDEKRTKEGEEESEVVPDDPDNP-LKAEAKKEKKKKSFKEEK 395
Query: 567 EELRSA 584
+E + A
Sbjct: 396 DEQKKA 401
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P+ + + +YF QFG + VI R T +S+GY FV D A A+ +
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDP 96
Query: 408 NNYLMGKRL-IKAAYI 452
N + G++ + AY+
Sbjct: 97 NPIIDGRKANVNLAYL 112
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/106 (27%), Positives = 49/106 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G I E + + F FG + + + TG K +AFVE+ P A + E+M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 408 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQY 545
N ++G R +K + + R PQ P+++ K K+Y
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNM---PQAQPIIDMVQKDAKKY 206
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/106 (27%), Positives = 49/106 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G I E + + F FG + + + TG K +AFVE+ P A + E+M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 408 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQY 545
N ++G R +K + + R PQ P+++ K K+Y
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNM---PQAQPIIDMVQKDAKKY 206
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/106 (27%), Positives = 49/106 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G I E + + F FG + + + TG K +AFVE+ P A + E+M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 408 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQY 545
N ++G R +K + + R PQ P+++ K K+Y
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNM---PQAQPIIDMVQKDAKKY 206
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 48.4 bits (110), Expect = 4e-06
Identities = 32/112 (28%), Positives = 53/112 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + + F++FG VS +VIR +T +SKGY FV F + A+ M
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 408 NNYLMGKRLIKAAYIPPDKRRWAMRYTWNPQNNPVLNTNLKLKKQYNAVKSD 563
N +GKR ++ WA R +N+ L ++ +N+ K+D
Sbjct: 197 NGKWIGKRAVRT--------NWAAR-----KNSEENRDKLTFEQVFNSTKAD 235
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 48.0 bits (109), Expect = 5e-06
Identities = 19/75 (25%), Positives = 38/75 (50%)
Frame = +3
Query: 234 LGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 413
+ ++P G + ++ F+ G + +C+++R + TG+S GY FV + A + N
Sbjct: 46 INYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNG 105
Query: 414 YLMGKRLIKAAYIPP 458
+ + IK +Y P
Sbjct: 106 LRLQNKTIKVSYARP 120
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ IP H++ F FG + R++ TG SKG FV F A + +T+
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 408 N 410
N
Sbjct: 190 N 190
Score = 34.3 bits (75), Expect = 0.065
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 276 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN-NYLMGKRL 434
Q FSQFG + N +++R T + KGYAFV + A ++N L GK L
Sbjct: 392 QLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTL 444
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G + + YF +FG V+ C V+R T R++G+ F+ F DP+ V
Sbjct: 45 GKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLN 104
Query: 402 TMNNYLMGKRL 434
+ L GK++
Sbjct: 105 NREHELDGKKI 115
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++G + + YF +FG V+ C V+R T R++G+ F+ F DP+ V
Sbjct: 45 GKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLN 104
Query: 402 TMNNYLMGKRL 434
+ L GK++
Sbjct: 105 NREHELDGKKI 115
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 437
FS+FG ++NC ++R RR+G S YAF+EF + + M+N L+ R I
Sbjct: 261 FSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRI 312
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 437
FS+FG ++NC ++R RR+G S YAF+EF + + M+N L+ R I
Sbjct: 261 FSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRI 312
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLI 437
FS+FG ++NC ++R RR+G S YAF+EF + + M+N L+ R I
Sbjct: 192 FSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRI 243
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 44.8 bits (101), Expect = 5e-05
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFS-QFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVAE 401
+++G++P E + +FS Q G V R++R + TG+ KG+AFV F D +V+ +A
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVS--LAL 305
Query: 402 TMNNYLMGKR 431
+M M KR
Sbjct: 306 SMETIKMEKR 315
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V++G + ++ + F +FG VS ++IR T + KGY FV + A+ + M
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 408 NNYLMGKRLIK 440
N +G+R I+
Sbjct: 194 NGAWLGRRTIR 204
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G+I + E ++ + F +FG ++ R T + +GYAFV+F A M
Sbjct: 258 VYVGNIAN-LGEDEIRRAFDRFGPINEVR------TFKIQGYAFVKFETKESAARAIVQM 310
Query: 408 NNYLMGKRLIKAAY 449
NN +G ++++ ++
Sbjct: 311 NNADIGGQIVRCSW 324
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ ++ + + F+Q G V ++I G + YAFVEF D A + ++
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLALQSH 98
Query: 408 N 410
N
Sbjct: 99 N 99
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+GHIP +E + F + G + + R++ +G S+GYAFV + + A A+T
Sbjct: 202 IYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTY 261
Query: 408 NNY 416
+ +
Sbjct: 262 DGH 264
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + H + Q+ YFSQ+G V + VIR T S+G+ FV F A+
Sbjct: 51 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDR 110
Query: 408 NNYLMGKRLIKAAYIPPDK 464
+ L GK + IP ++
Sbjct: 111 PHKLGGKTVDSKRAIPREQ 129
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + H + Q+ YFSQ+G V + VIR T S+G+ FV F A+
Sbjct: 71 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDR 130
Query: 408 NNYLMGKRLIKAAYIPPDK 464
+ L GK + IP ++
Sbjct: 131 PHKLGGKTVDSKRAIPREQ 149
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + H + Q+ YFSQ+G V + VIR T S+G+ FV F A+
Sbjct: 72 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDR 131
Query: 408 NNYLMGKRLIKAAYIPPDK 464
+ L GK + IP ++
Sbjct: 132 PHKLGGKTVDSKRAIPREQ 150
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ H+P F + + F+ FGG+ + +V + T SK + FV + + A M
Sbjct: 337 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 396
Query: 408 NNYLMGKRLIK 440
N + +G + +K
Sbjct: 397 NGFQIGSKRLK 407
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ H+P F + + F+ FGG+ + +V + T SK + FV + + A M
Sbjct: 501 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 560
Query: 408 NNYLMGKRLIK 440
N + +G + +K
Sbjct: 561 NGFQIGSKRLK 571
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 371
+++G IP + E + F ++G V +C ++R + T SKG FV F+
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + + F++FG + +C V+R + G+S+G AFV F + + A + + M
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 408 NN 413
++
Sbjct: 203 HH 204
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ H+P F + + F+ FGG+ + +V + T SK + FV + + A M
Sbjct: 501 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 560
Query: 408 NNYLMGKRLIK 440
N + +G + +K
Sbjct: 561 NGFQIGSKRLK 571
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 371
+++G IP + E + F ++G V +C ++R + T SKG FV F+
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + + F++FG + +C V+R + G+S+G AFV F + + A + + M
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 408 NN 413
++
Sbjct: 203 HH 204
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ H+P F + + F+ FGG+ + +V + T SK + FV + + A M
Sbjct: 430 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 489
Query: 408 NNYLMGKRLIK 440
N + +G + +K
Sbjct: 490 NGFQIGSKRLK 500
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 371
+++G IP + E + F ++G V +C ++R + T SKG FV F+
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + + F++FG + +C V+R + G+S+G AFV F + + A + + M
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 408 NN 413
++
Sbjct: 203 HH 204
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ H+P F + + F+ FGG+ + +V + T SK + FV + + A M
Sbjct: 501 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 560
Query: 408 NNYLMGKRLIK 440
N + +G + +K
Sbjct: 561 NGFQIGSKRLK 571
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 371
+++G IP + E + F ++G V +C ++R + T SKG FV F+
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + + F++FG + +C V+R + G+S+G AFV F + + A + + M
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 408 NN 413
++
Sbjct: 203 HH 204
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + E + + FS G V + RV R + S GYA+V F PA A+ +TM
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 408 N 410
N
Sbjct: 119 N 119
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ +I + + +FS FG +++ +V+ GRSKG+ FV F P A M
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDM 403
Query: 408 NNYLMGKRLIKAA 446
N+ ++G + + A
Sbjct: 404 NSKMIGAKPLYVA 416
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++ ++ + FS FG + +C+V G SKGY FV F AQ E
Sbjct: 145 GNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIE 203
Query: 402 TMNNYLMGKRLIKAAYIPPDKRR 470
+N L+ + + P +R
Sbjct: 204 KVNGMLLSDKKVYVGKFQPRAQR 226
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + E + + FS G V + RV R + S GYA+V F PA A+ +TM
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 408 N 410
N
Sbjct: 119 N 119
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ +I + + +FS FG +++ +V+ GRSKG+ FV F P A M
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDM 403
Query: 408 NNYLMGKRLIKAA 446
N+ ++G + + A
Sbjct: 404 NSKMIGAKPLYVA 416
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +3
Query: 222 GLVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 401
G +++ ++ + FS FG + +C+V G SKGY FV F AQ E
Sbjct: 145 GNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIE 203
Query: 402 TMNNYLMGKRLIKAAYIPPDKRR 470
+N L+ + + P +R
Sbjct: 204 KVNGMLLSDKKVYVGKFQPRAQR 226
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + E + + FS G V + RV R T S GYA+V F PA A+ +TM
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 408 N 410
N
Sbjct: 94 N 94
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPP 458
FS FG + +C+V G SKGY FV F AQ + +N L+ GK++ + P
Sbjct: 140 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR 198
Query: 459 DKR 467
+R
Sbjct: 199 AQR 201
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ + + + + + F++FG +++C V+ G+SKG+ FV F +P A+ + +
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQAL 272
Query: 408 NN 413
++
Sbjct: 273 HD 274
Score = 33.9 bits (74), Expect = 0.086
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ + + + F +G +++ +V+ GRSKG+ FV F P A M
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEM 377
Query: 408 NNYLM 422
N+ ++
Sbjct: 378 NSKMV 382
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + E + + FS G V + RV R T S GYA+V F PA A+ +TM
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 408 N 410
N
Sbjct: 94 N 94
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ + + + + + F++FG +++C V+ G+SKG+ FV F +P A+ + +
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQAL 212
Query: 408 NN 413
++
Sbjct: 213 HD 214
Score = 33.9 bits (74), Expect = 0.086
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ + + + F +G +++ +V+ GRSKG+ FV F P A M
Sbjct: 259 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEM 317
Query: 408 NNYLM 422
N+ ++
Sbjct: 318 NSKMV 322
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+G + E + + FS G V + RV R T S GYA+V F PA A+ +TM
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 408 N 410
N
Sbjct: 94 N 94
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPP 458
FS FG + +C+V G SKGY FV F AQ + +N L+ GK++ + P
Sbjct: 140 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR 198
Query: 459 DKR 467
+R
Sbjct: 199 AQR 201
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ + + + + + F++FG +++C V+ G+SKG+ FV F +P A+ + +
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQAL 272
Query: 408 NN 413
++
Sbjct: 273 HD 274
Score = 33.9 bits (74), Expect = 0.086
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ + + + F +G +++ +V+ GRSKG+ FV F P A M
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEM 377
Query: 408 NNYLM 422
N+ ++
Sbjct: 378 NSKMV 382
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++ +G ++ Q+F G VS + R +G KG+A+VEF + Q
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMT 139
Query: 408 NNYLMGKRL 434
++ L G+++
Sbjct: 140 DSLLRGRQI 148
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G I ++ +F+Q+G V+ +V R GRS+G+AFVEF ++
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 408 NNYLMGKRL-IKAAYIPPDKR 467
+ GK + +K A +K+
Sbjct: 91 EQTIKGKSVEVKPAKSRENKK 111
Score = 33.9 bits (74), Expect = 0.086
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAET 404
V++G +P + E + +F QFG V + ++T + +AF+ F + A + ++T
Sbjct: 112 VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQT 171
Query: 405 MNNYLMGKRLIKAAYIPPDKR 467
+ + +K A +P KR
Sbjct: 172 KQTFGTRECDVKKA-VPQGKR 191
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G I ++ +F+Q+G V+ +V R GRS+G+AFVEF ++
Sbjct: 31 IFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90
Query: 408 NNYLMGKRL-IKAAYIPPDKR 467
+ GK + +K A +K+
Sbjct: 91 EQTIKGKSVEVKPAKSRENKK 111
Score = 33.9 bits (74), Expect = 0.086
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAET 404
V++G +P + E + +F QFG V + ++T + +AF+ F + A + ++T
Sbjct: 112 VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQT 171
Query: 405 MNNYLMGKRLIKAAYIPPDKR 467
+ + +K A +P KR
Sbjct: 172 KQTFGTRECDVKKA-VPQGKR 191
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 434
+ ++FS G V + R+I RTGRSKG +VEF D + LMG L
Sbjct: 41 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPL 95
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRL 434
+ ++FS G V + R+I RTGRSKG +VEF D + LMG L
Sbjct: 186 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPL 240
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 371
+++G IP + E + F ++G V +C ++R + T SKG FV F+
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + + F++FG + +C V+R + G+S+G AFV F + + A + + M
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 408 NN 413
++
Sbjct: 203 HH 204
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 371
+++G IP + E + F ++G V +C ++R + T SKG FV F+
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + E + + F++FG + +C V+R + G+S+G AFV F + + A + + M
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 408 NN 413
++
Sbjct: 203 HH 204
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 371
+++G IP + E + F ++G V +C ++R + T SKG FV F+
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKG 350
+++G + E + + F++FG + +C V+R + G+S+G
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRG 183
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + M +++SQFG +++ V+R T RS+G+ FV F +
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQR 84
Query: 408 NNYLMGKRLIKAAYIPPDKR 467
+ + GK + +P D +
Sbjct: 85 PHIIDGKTVDPKRAVPRDDK 104
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + M +++SQFG +++ V+R T RS+G+ FV F +
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQR 84
Query: 408 NNYLMGKRLIKAAYIPPDKR 467
+ + GK + +P D +
Sbjct: 85 PHIIDGKTVDPKRAVPRDDK 104
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G + + M +++SQFG +++ V+R T RS+G+ FV F +
Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQR 84
Query: 408 NNYLMGKRLIKAAYIPPDKR 467
+ + GK + +P D +
Sbjct: 85 PHIIDGKTVDPKRAVPRDDK 104
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
V+ G + + + + + F ++ +V+R RT +SKGY FV F D M
Sbjct: 205 VFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREM 264
Query: 408 NNYLMGKRLIK 440
+ +G R IK
Sbjct: 265 DGKYVGNRPIK 275
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+V+L ++ + E + + S+FG + + + + +G SKG AFV F P A E
Sbjct: 264 VVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEG 323
Query: 405 M-NNYLMGKRLIKAAYIPPDK 464
+ + ++ RL+KA P K
Sbjct: 324 VEDGVIIDNRLVKANLAIPRK 344
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 282 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLM-GKRLIKAAYIPP 458
FS FG + +C+V G SKGY FV F AQ + +N L+ GK++ + P
Sbjct: 77 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR 135
Query: 459 DKR 467
+R
Sbjct: 136 AQR 138
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+ + + + + + F++FG +++C V+ G+SKG+ FV F +P A+ + +
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQAL 209
Query: 408 NN 413
++
Sbjct: 210 HD 211
Score = 33.9 bits (74), Expect = 0.086
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+Y+ ++ + + + F +G +++ +V+ GRSKG+ FV F P A M
Sbjct: 256 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEM 314
Query: 408 NNYLM 422
N+ ++
Sbjct: 315 NSKMV 319
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VYL H+ + Q+ YF ++G + + + TG +G+A + F A E
Sbjct: 27 VYLTHVKWVTGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQR 86
Query: 408 NNYLMGKRLIKAAYIP 455
+ + G R+ YIP
Sbjct: 87 PHVIDGDRVDVEPYIP 102
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNC-RVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G++ E + FS FG + +++R +G SKG+AF+ F + E
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161
Query: 405 MNNYLMGKRLIKAAY 449
MN + R I +Y
Sbjct: 162 MNGQFLCNRAITVSY 176
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNC-RVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++G++ E + FS FG + +++R +G SKG+AF+ F + E
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 171
Query: 405 MNNYLMGKRLIKAAY 449
MN + R I +Y
Sbjct: 172 MNGQFLCNRAITVSY 186
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 449
M +++SQFG +++ V+R T RS+G+ FV F + + + GK +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 450 IPPDKR 467
+P D +
Sbjct: 61 VPRDDK 66
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 270 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAY 449
M +++SQFG +++ V+R T RS+G+ FV F + + + GK +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 450 IPPDKR 467
+P D +
Sbjct: 61 VPRDDK 66
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAE 401
+V++ +I E + FS++G + N + RRTG KGYA VE+ A + + +
Sbjct: 56 IVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQ 115
Query: 402 TMNNYLMGKRL 434
+ + L+G+ +
Sbjct: 116 SNDTDLLGQNV 126
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P+ E Q+ + FG + + G SKGYAF E+ DP + +
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFS-LNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 408 NNYLMG-KRLI 437
N +G K+L+
Sbjct: 352 NGMQLGDKQLV 362
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQ---FGGVSNC--RVIRSRRTGRSKGYAFVEFH--DPAVA 386
+Y+G+IP G E M +F+Q G++ I + K +AF+EF D A
Sbjct: 186 LYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTA 245
Query: 387 QIVAETMNNYLMGKRL 434
+ + +N MG++L
Sbjct: 246 GMAFDGIN--FMGQQL 259
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P+ E Q+ + FG + + G SKGYAF E+ DP + +
Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFS-LNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 408 NNYLMG-KRLI 437
N +G K+L+
Sbjct: 352 NGMQLGDKQLV 362
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQ---FGGVSNC--RVIRSRRTGRSKGYAFVEFH--DPAVA 386
+Y+G+IP G E M +F+Q G++ I + K +AF+EF D A
Sbjct: 186 LYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTA 245
Query: 387 QIVAETMNNYLMGKRL 434
+ + +N MG++L
Sbjct: 246 GMAFDGIN--FMGQQL 259
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P+ E Q+ + FG + + G SKGYAF E+ DP + +
Sbjct: 268 IFIGGLPNYLTEDQVKELLCSFGPLKAFS-LNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 326
Query: 408 NNYLMG-KRLI 437
N +G K+L+
Sbjct: 327 NGMQLGDKQLV 337
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQ---FGGVSNC--RVIRSRRTGRSKGYAFVEFH--DPAVA 386
+Y+G+IP G E M +F+Q G++ I + K +AF+EF D A
Sbjct: 161 LYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTA 220
Query: 387 QIVAETMNNYLMGKRL 434
+ + +N MG++L
Sbjct: 221 GMAFDGIN--FMGQQL 234
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G +P+ E Q+ + FG + + G SKGYAF E+ DP + +
Sbjct: 271 IFIGGLPNYLTEDQVKELLCSFGPLKAFS-LNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 408 NNYLMG-KRLI 437
N +G K+L+
Sbjct: 330 NGMQLGDKQLV 340
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQ---FGGVSNC--RVIRSRRTGRSKGYAFVEFH--DPAVA 386
+Y+G+IP G E M +F+Q G++ I + K +AF+EF D A
Sbjct: 164 LYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTA 223
Query: 387 QIVAETMNNYLMGKRL 434
+ + +N MG++L
Sbjct: 224 GMAFDGIN--FMGQQL 237
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 36.3 bits (80), Expect = 0.016
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 285 SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
S++G +++ + I + T KGY FV+F P A + +N
Sbjct: 128 SKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLN 169
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 36.3 bits (80), Expect = 0.016
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 285 SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
S++G +++ + I + T KGY FV+F P A + +N
Sbjct: 102 SKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLN 143
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 36.3 bits (80), Expect = 0.016
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++P E ++ F ++G + + ++GR +AFVEF D A+
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 408 NNYLMGKRLIKAAY 449
+ Y R I+ +
Sbjct: 67 DGYEFDGRRIRVEF 80
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 36.3 bits (80), Expect = 0.016
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
VY+G++P E ++ F ++G + + ++GR +AFVEF D A+
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 408 NNYLMGKRLIKAAY 449
+ Y R I+ +
Sbjct: 67 DGYEFDGRRIRVEF 80
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 35.5 bits (78), Expect = 0.028
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 240 HIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD-PAVAQIVAETMNNY 416
++P E ++ F + G V + R + TG KG+AFV F A+ +AE +N+
Sbjct: 182 NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAE-LNDI 240
Query: 417 LMGKRLIKAAYIPP 458
M ++K + P
Sbjct: 241 RMYHMVLKVEWTRP 254
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 35.1 bits (77), Expect = 0.037
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+++G P E ++ ++F +F V + ++++S G+SKGY F+ F
Sbjct: 68 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSL-DGQSKGYGFITF 113
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 35.1 bits (77), Expect = 0.037
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++G I + E ++ + F +G + ++ G+ +GYAF+E+ D A +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDE-AGKPRGYAFIEYSDKAEMHTAYKKA 164
Query: 408 NNYLM-GKRLIKAAYIPPDKRRWAMRYTWNPQ 500
+ + GKRL+ D R + TW P+
Sbjct: 165 DGIKVDGKRLV------VDYERGRTQKTWLPR 190
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 35.1 bits (77), Expect = 0.037
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
+++G P E ++ ++F +F V + ++++S G+SKGY F+ F
Sbjct: 69 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSL-DGQSKGYGFITF 114
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 33.9 bits (74), Expect = 0.086
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 261 EHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 371
E + F +FG ++ C ++ R +G S+G+ F+ F+
Sbjct: 89 EKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFN 125
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 33.9 bits (74), Expect = 0.086
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ +IP F + + F +FG VS+ +I + R SKG+ FV P A+ + +
Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNER--GSKGFGFVTMERPQDAERARQEL 212
Query: 408 NNYLMGKRLIK 440
+ ++ R I+
Sbjct: 213 HGSMIEGRKIE 223
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 33.9 bits (74), Expect = 0.086
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+++ +IP F + + F +FG VS+ +I + R SKG+ FV P A+ + +
Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNER--GSKGFGFVTMERPQDAERARQEL 212
Query: 408 NNYLMGKRLIK 440
+ ++ R I+
Sbjct: 213 HGSMIEGRKIE 223
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++ ++P + F+QF G+ + R++ +R G AFVEF ++A T
Sbjct: 133 ILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNR-----PGIAFVEFDTDSLAIPARTT 187
Query: 405 MNNY 416
+NN+
Sbjct: 188 LNNF 191
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 31.9 bits (69), Expect = 0.35
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
VY+G++ ++ ++F+ G V+ + + + TG K +AFVEF
Sbjct: 48 VYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEF 94
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/64 (23%), Positives = 34/64 (53%)
Frame = +3
Query: 225 LVYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAET 404
+++ +IP G Q+ FSQF G+ R + + +K +AF+E+ +++ +
Sbjct: 144 ILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPN-----TKDFAFIEYESEDLSEPARQA 198
Query: 405 MNNY 416
++N+
Sbjct: 199 LDNF 202
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
VY+G +P ++ + F +FG + V R R G+AFVE+ D
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDD 48
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
VY+G +P ++ + F +FG + V R R G+AFVE+ D
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDD 48
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 374
VY+G +P ++ + F +FG + V R R G+AFVE+ D
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDD 48
>U80455-3|AAO38606.1| 145|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform c protein.
Length = 145
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 371
+++ H+P F + + F+ FGG+ + +V + T SK F EF+
Sbjct: 78 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSK--CFGEFY 123
>U23484-17|AAK68296.1| 367|Caenorhabditis elegans Tudor domain plus
rrm motif protein1 protein.
Length = 367
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++ +IP + + + F FG VS CRV+ G+ + FV A A V + +N
Sbjct: 16 HIRNIPKAWNDWNLFHVFQNFGKVSYCRVVGQSNDGQVQ-LGFVNMMSVADADEVRKNLN 74
Query: 411 N 413
+
Sbjct: 75 D 75
>AF303251-1|AAG50209.1| 367|Caenorhabditis elegans 2F713 protein.
Length = 367
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 231 YLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMN 410
++ +IP + + + F FG VS CRV+ G+ + FV A A V + +N
Sbjct: 16 HIRNIPKAWNDWNLFHVFQNFGKVSYCRVVGQSNDGQVQ-LGFVNMMSVADADEVRKNLN 74
Query: 411 N 413
+
Sbjct: 75 D 75
>U56963-3|AAP31428.1| 312|Caenorhabditis elegans Serpentine
receptor, class v protein28 protein.
Length = 312
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 121 NPLMDLINFFCLLESNATFSSILFRNLKCDLSKNLEV 11
N + IN FC+L N FS R LKC+ + E+
Sbjct: 263 NGTLSYINPFCILLLNRDFSRQFMRTLKCEKVRVSEI 299
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 432 IFSP*DNYSWSQQQFVRQQDHETLQMH 352
+ SP + + QQQ V+QQ + +QMH
Sbjct: 1403 LMSPIHQHQFHQQQMVQQQQQQQMQMH 1429
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 432 IFSP*DNYSWSQQQFVRQQDHETLQMH 352
+ SP + + QQQ V+QQ + +QMH
Sbjct: 1403 LMSPIHQHQFHQQQMVQQQQQQQMQMH 1429
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+YLG IP+ E + ++ +G ++N + G+AFV+F D A+ +
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISM--------KYGFAFVDFEDSRDAEDACHDL 55
Query: 408 NNYLM 422
+ M
Sbjct: 56 DGKTM 60
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+YLG IP+ E + ++ +G ++N + G+AFV+F D A+ +
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISM--------KYGFAFVDFEDSRDAEDACHDL 55
Query: 408 NNYLM 422
+ M
Sbjct: 56 DGKTM 60
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETM 407
+YLG IP+ E + ++ +G ++N + G+AFV+F D A+ +
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISM--------KYGFAFVDFEDSRDAEDACHDL 55
Query: 408 NNYLM 422
+ M
Sbjct: 56 DGKTM 60
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 432 IFSP*DNYSWSQQQFVRQQDHETLQMH 352
+ SP + + QQQ V+QQ + +QMH
Sbjct: 1403 LMSPIHQHQFHQQQMVQQQQQQQMQMH 1429
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 294 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 452
G + + ++R Y V FHDP + +I+ T + Y M R + Y+
Sbjct: 57 GAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVYV 107
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 294 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 452
G + + ++R Y V FHDP + +I+ T + Y M R + Y+
Sbjct: 57 GAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVYV 107
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 294 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 452
G + + ++R Y V FHDP + +I+ T + Y M R + Y+
Sbjct: 57 GAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVYV 107
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 294 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 452
G + + ++R Y V FHDP + +I+ T + Y M R + Y+
Sbjct: 57 GAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVYV 107
>AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical
protein Y67A10A.1 protein.
Length = 644
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 240 HIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNN 413
H + + +++ + +G S+ R++ + SK VE H P V IVA MNN
Sbjct: 447 HFNYNYSDYRYMSVIASYGLFSDHRLLSQQALEFSKKQ--VELHKPDVLFIVARYMNN 502
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 294 GGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAETMNNYLMGKRLIKAAYI 452
G + + ++R Y V FHDP + +I+ T + Y M R + Y+
Sbjct: 57 GAAKIFKTVMAQREKLIYNYIMVPFHDPYLGEIINTTDSTYFM--RQLSKVYV 107
>U56963-4|AAB38117.2| 316|Caenorhabditis elegans Serpentine
receptor, class v protein29 protein.
Length = 316
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 121 NPLMDLINFFCLLESNATFSSILFRNLKC 35
N + IN FC+L N FS R LKC
Sbjct: 263 NGTLSYINPFCILLLNRDFSRQFMRTLKC 291
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 461 IRWYVSSFYQSFPHEIIIHGLSNNLCDSR 375
+RW+ +S+ S+ E+ + L NLC+ +
Sbjct: 90 LRWWAASYRNSYGEEMPVEQLVQNLCNEK 118
>AF039053-5|AAC25875.2| 293|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 23 protein.
Length = 293
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 467 SFIRWYVSSFYQSFPHEIIIHGLSNNLCDSRIMKLYKCISF 345
SFI +Y +F +FP + G S N C SR K + F
Sbjct: 143 SFI-YYFCNFELTFPRNCLTIGCSINACSSRFWTKSKLVIF 182
>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
protein R03G5.3 protein.
Length = 1311
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = -2
Query: 555 LLRCIVF*VSDSYLRQDCSEGSMCISWPIFVY 460
LL C ++ + +++R D +G+MCIS+ +F++
Sbjct: 474 LLSCCLY-RTIAFVRFDYGKGAMCISFLVFIF 504
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
V+LG +P ++ Q FS+FG V + + G KG A V F
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTF 367
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
V+LG +P ++ Q FS+FG V + + G KG A V F
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTF 367
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
V+LG +P ++ Q FS+FG V + + G KG A V F
Sbjct: 107 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTF 153
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 228 VYLGHIPHGFYEHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 368
V+LG +P ++ Q FS+FG V + + G KG A V F
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTF 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,946,104
Number of Sequences: 27780
Number of extensions: 227274
Number of successful extensions: 701
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -