Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d22r
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   4.1  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   5.4  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -3

Query: 619 EELAPKNEAAN**KRTDTNKASLRTLKTLMLTKGIKR 509
           E   P +E AN  KR D    SLR  K L   KG+KR
Sbjct: 159 ESFWPLSEPANLKKRFDEIFESLRYAKALDQIKGLKR 195


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 25/78 (32%), Positives = 35/78 (44%)
 Frame = -3

Query: 688 GTKTVKSFQLRMELLELPRAVRGEELAPKNEAAN**KRTDTNKASLRTLKTLMLTKGIKR 509
           GT T     L + LL L +A     L    EAA      D+ +A  R +   +  + + R
Sbjct: 680 GTITTHYGSLLVLLLRLRQACCHPWLIVAREAAV--DDNDSFQAKNRAIYNQIYPEAVNR 737

Query: 508 LPKKCVPTLTCSICPMVV 455
           L  K + TL CS+C  VV
Sbjct: 738 L--KLIETLQCSLCMDVV 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,881
Number of Sequences: 5004
Number of extensions: 52182
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)