Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d22r
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0585 + 30155021-30155910,30156130-30157006                       31   0.81 
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241...    29   5.7  
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92...    29   5.7  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    28   9.9  

>02_05_0585 + 30155021-30155910,30156130-30157006
          Length = 588

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
 Frame = -2

Query: 791 CPRNAXQESLXSGKTSXTSRLLHYEKSDGSGFTERYQNSEVVPVENGVIRTAESGERGGT 612
           CP    +E +  G  S   +++ YE  +GS  +            +G  R  +  E G  
Sbjct: 80  CPTEVSEEMVSEGIASQEKKVVEYESVNGSSTSFHTCEGSGPGKASGSARMTDRSETGER 139

Query: 611 CSEERSSELIKADGYEQSVVKNVKN-ANAHERNQKATEEVRT 489
            S  R      +D  ++S   ++ +    H+ N    E ++T
Sbjct: 140 GSSSRCRPSTSSDISDESSCSSMSSTTKPHKSNDSRWEAIQT 181


>04_04_0397 -
           24921892-24922947,24923486-24923734,24923807-24924157,
           24924244-24924331,24924466-24924563,24925141-24925362,
           24925490-24925585,24926410-24926481,24927156-24927305
          Length = 793

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 424 EEWEQPIVQLMPRPRSLVPQPLLLPEISELNKP 326
           + WE P  + MPR  SL  Q  LL + S +NKP
Sbjct: 520 DNWEVPRSKSMPRGDSLRNQGPLLNKPSSINKP 552


>04_01_0084 -
           912255-912368,912738-912822,914050-917105,920290-920508
          Length = 1157

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 631 LSAVLITPFSTGTTSLFWY 687
           +  V+ TP STG+ S+FWY
Sbjct: 883 IEGVVFTPPSTGSNSIFWY 901


>02_01_0246 +
           1617326-1617367,1618903-1624419,1625040-1625498,
           1625603-1625887,1626016-1626030,1626339-1626419,
           1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 551 KNVKNANAHERNQKATEEVRTDTD 480
           +N+ N   HE NQ++ E+V T +D
Sbjct: 90  ENISNEQPHEINQESQEQVETSSD 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,117
Number of Sequences: 37544
Number of extensions: 305729
Number of successful extensions: 907
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)