Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d22r
         (801 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK094792-1|BAC04425.1|  477|Homo sapiens protein ( Homo sapiens ...    31   4.8  
AF275818-1|AAF87244.1|  504|Homo sapiens PR-domain containing pr...    31   4.8  
M60503-1|AAA63243.1| 1084|Homo sapiens profilaggrin protein.           30   8.5  

>AK094792-1|BAC04425.1|  477|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37473 fis, clone BRAWH2012540. ).
          Length = 477

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 481 TCSICPMVVLPKLRLRLLFEEWEQPIVQLMPRPRSLVPQPLLLPEISE 338
           T S CP  +  K ++R L  E +      +P P  L PQ L LPE S+
Sbjct: 407 TTSFCPNCIRLKKKVRELQAELDMLKSGKLPEPPVLPPQVLELPEFSD 454


>AF275818-1|AAF87244.1|  504|Homo sapiens PR-domain containing
           protein 11 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 481 TCSICPMVVLPKLRLRLLFEEWEQPIVQLMPRPRSLVPQPLLLPEISE 338
           T S CP  +  K ++R L  E +      +P P  L PQ L LPE S+
Sbjct: 434 TTSFCPNCIRLKKKVRELQAELDMLKSGKLPEPPVLPPQVLELPEFSD 481


>M60503-1|AAA63243.1| 1084|Homo sapiens profilaggrin protein.
          Length = 1084

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -2

Query: 707 GSGFTERYQNSEVVPVENGVIRTA--ESGERGGTCSEERSSELIKADGYEQSVVKNVKNA 534
           GSG  +   +S    +  G   TA  +SG RG   S+   +E    D   QSV    +  
Sbjct: 324 GSGHQQSADSSRHSGIGRGQASTAVRDSGHRGSRGSQASDNEGHSEDSDTQSVAGQRQAG 383

Query: 533 NAHERNQKATEEVRTDT 483
           + HE +Q++T     +T
Sbjct: 384 SHHESHQESTRGQSRET 400


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,920,184
Number of Sequences: 237096
Number of extensions: 1750960
Number of successful extensions: 4473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4471
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)