Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d22r
         (801 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118699-1|AAM50559.1|  309|Drosophila melanogaster AT19571p pro...    29   5.6  
AE014298-2117|AAF48435.2|  309|Drosophila melanogaster CG15031-P...    29   5.6  
AY118342-1|AAM48371.1|  686|Drosophila melanogaster LD46263p pro...    29   9.8  
AE013599-1199|AAF58730.2|  686|Drosophila melanogaster CG12942-P...    29   9.8  

>AY118699-1|AAM50559.1|  309|Drosophila melanogaster AT19571p
           protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 22/62 (35%), Positives = 26/62 (41%)
 Frame = -2

Query: 758 SGKTSXTSRLLHYEKSDGSGFTERYQNSEVVPVENGVIRTAESGERGGTCSEERSSELIK 579
           +G T  T      E+S GSG TE    S V     G   T  SG  GG+   E   E + 
Sbjct: 222 TGGTEQTGNTETGERSAGSGETETAAASGVPDASGGSGGTEGSGGLGGSGELEDDGEELT 281

Query: 578 AD 573
           AD
Sbjct: 282 AD 283


>AE014298-2117|AAF48435.2|  309|Drosophila melanogaster CG15031-PA
           protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 22/62 (35%), Positives = 26/62 (41%)
 Frame = -2

Query: 758 SGKTSXTSRLLHYEKSDGSGFTERYQNSEVVPVENGVIRTAESGERGGTCSEERSSELIK 579
           +G T  T      E+S GSG TE    S V     G   T  SG  GG+   E   E + 
Sbjct: 222 TGGTEQTGNTETGERSAGSGETETAAASGVPDASGGSGGTEGSGGLGGSGELEDDGEELT 281

Query: 578 AD 573
           AD
Sbjct: 282 AD 283


>AY118342-1|AAM48371.1|  686|Drosophila melanogaster LD46263p
           protein.
          Length = 686

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 25/96 (26%), Positives = 34/96 (35%)
 Frame = -3

Query: 754 EKPVGRRGSYTMRNXTAQASLNGTKTVKSFQLRMELLELPRAVRGEELAPKNEAAN**KR 575
           EK V    +Y   N       NG  T +   L    LE+     G   +PKNEA+N    
Sbjct: 223 EKAVENNNNYNFNNK------NGDVTDEECDLIQRALEMTLNDDGCSQSPKNEASN---E 273

Query: 574 TDTNKASLRTLKTLMLTKGIKRLPKKCVPTLTCSIC 467
           T      +     L +           +P L C+IC
Sbjct: 274 TQLKSNGIEVSSPLFIKLATTSSTTGNIPILKCNIC 309


>AE013599-1199|AAF58730.2|  686|Drosophila melanogaster CG12942-PA
           protein.
          Length = 686

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 25/96 (26%), Positives = 34/96 (35%)
 Frame = -3

Query: 754 EKPVGRRGSYTMRNXTAQASLNGTKTVKSFQLRMELLELPRAVRGEELAPKNEAAN**KR 575
           EK V    +Y   N       NG  T +   L    LE+     G   +PKNEA+N    
Sbjct: 223 EKAVENNNNYNFNNK------NGDVTDEECDLIQRALEMTLNDDGCSQSPKNEASN---E 273

Query: 574 TDTNKASLRTLKTLMLTKGIKRLPKKCVPTLTCSIC 467
           T      +     L +           +P L C+IC
Sbjct: 274 TQLKSNGIEVSSPLFIKLATTSSTTGNIPILKCNIC 309


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,492,558
Number of Sequences: 53049
Number of extensions: 541940
Number of successful extensions: 1490
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)