Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d22r
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   5.8  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   5.8  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -2

Query: 752 KTSXTSRLLHYEKSDGSGFTERYQNSEVVPVENGVIRTAESGERGGTCSEERSSELIKAD 573
           K   T  +++ EKS+         ++ +    +G   T+    R  +CS +R+ E  K D
Sbjct: 179 KEHDTVLVVNIEKSENESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREYRKKD 238

Query: 572 -GYEQSVVKNVKNANAHERNQK 510
             YE+  + N K     ER  +
Sbjct: 239 RQYEK--LHNEKEKLLEERTSR 258


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
 Frame = -2

Query: 782 NAXQESLXSGKTSXTSRLLHYEKSDGSGFTERYQNSEVVPVENGVIRTAESGERGGTCSE 603
           NA         T  T RL    ++DG G  +R  + E    E+G  R     E+     E
Sbjct: 249 NATAAMTTGTTTIPTRRLRKRRQNDGEGADDRDDDEENEEEEDG--RGQSEAEKRLKLDE 306

Query: 602 ERSSEL--IKADGYEQSVVKNVKNANAHERNQKATEEVRTD 486
           +    +  ++ +    S      NA   +  ++ TEEV  D
Sbjct: 307 DADGAVSPLRREKDRGSREYPTSNATDTDGTKERTEEVALD 347



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/41 (19%), Positives = 17/41 (41%)
 Frame = -2

Query: 569 YEQSVVKNVKNANAHERNQKATEEVRTDTDVQHLPNGGIAK 447
           Y+Q   +  +     E  +   +E++ +       NGG A+
Sbjct: 163 YQQQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGGAAR 203


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -2

Query: 752 KTSXTSRLLHYEKSDGSGFTERYQNSEVVPVENGVIRTAESGERGGTCSEERSSELIKAD 573
           K   T  +++ EKS          ++ +    +G   T+    R  +CS +R+ E  K D
Sbjct: 190 KEHDTVLVVNIEKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKD 249

Query: 572 -GYEQSVVKNVKNANAHERNQK 510
             YE+  + N K     ER  +
Sbjct: 250 RQYEK--LHNEKEKFLEERTSR 269


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -2

Query: 752 KTSXTSRLLHYEKSDGSGFTERYQNSEVVPVENGVIRTAESGERGGTCSEERSSELIKAD 573
           K   T  +++ EKS          ++ +    +G   T+    R  +CS +R+ E  K D
Sbjct: 190 KEHDTVLVVNIEKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKD 249

Query: 572 -GYEQSVVKNVKNANAHERNQK 510
             YE+  + N K     ER  +
Sbjct: 250 RQYEK--LHNEKEKFLEERTSR 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,063
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)