Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d22f
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    32   0.063
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.44 
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    28   1.0  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   1.8  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     27   1.8  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    27   2.4  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   3.1  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    26   4.1  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.5  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   5.5  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   5.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.2  
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    25   7.2  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   9.5  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   9.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.5  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 31.9 bits (69), Expect = 0.063
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 213  PPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAK 341
            PP  +   + P  +  +K+DPL +I +A P P +    G T+K
Sbjct: 1944 PPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTRKARGKTSK 1986


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
 Frame = +3

Query: 198  PSQGKPPPESRKPR-APAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMP--- 365
            PS  + PP S  P  AP+ T        A++    P    + +    + AP   SMP   
Sbjct: 1499 PSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSMPHRS 1558

Query: 366  -PVLGEAKEGSKRA----APAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFT 530
             P   +      +A    APA ++     FS   G +   G+     AA   +   PA  
Sbjct: 1559 SPYAPQEPVQKPQAINNIAPATNLGTSQSFSPRMGPVNNSGSPLAMNAAGQPSLAVPAVP 1618

Query: 531  MAP 539
             AP
Sbjct: 1619 SAP 1621


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 186 RPRRSYTVNNISSPILICLNTLTLKSLKISP 94
           RPR+S  ++  SSPI    N   L SL ISP
Sbjct: 490 RPRKSANISVTSSPIRPSKNENNLPSLAISP 520


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 466 PGINPLASENFPRPVILKAGAALLLPSFASPSTGGI 359
           P   P  +  FPR V+  AG  ++LP +  P   GI
Sbjct: 297 PQGEPPKTAQFPRMVVPSAGVHVVLPEYYCPPNIGI 332


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 484 VVYVPGPGINPLASENFPRPVILKAGAALLLPSFASPST 368
           V+YVP P I PL  EN    +I     ++LLP + S +T
Sbjct: 335 VLYVPSPQIQPLWLENEDSNII--PTNSMLLPQWGSITT 371


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 141 ILVRKYCLLYTISVGDNIDPSQGK-PPPESRKPRAPAFTFGQKLDPLANIAKAGPGPAS 314
           I+ +   LL T SV ++ + +  K  PP + KP A    F   L  L  +     GP S
Sbjct: 153 IIAKPVALLPTPSVANSQEYTLDKLSPPSTAKPPASVIEFNPSLAKLPTVKYLQSGPFS 211


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 183 PRRSYTVNNISSPILICLNTLTLKSLKISPA*FALLLFVLNCQYLVSVRARSCSSLGIH* 4
           P  + T + +S P+L   +TLT  SL+ S A  +L  F    +++  ++  + S L IH 
Sbjct: 143 PLSTETQSEVSDPLL---DTLTPNSLESSFASISLNSFTSANEFIQFLKRLASSKLSIHT 199

Query: 3   F 1
           F
Sbjct: 200 F 200


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 364 HRYLVKRKKGVKELHRLSVSQVV 432
           +++L   +KG +ELHR  +SQ++
Sbjct: 216 YQFLKDMRKGFRELHRKDLSQLI 238


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 190 LSPTEIVYSKQYFLTNINLFK 128
           LSPT++V   +YFL  +NLFK
Sbjct: 160 LSPTDLVAIDEYFL--VNLFK 178


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +3

Query: 144 LVRKYCLLYTISVGDNIDPSQGKPPPESRKPRAPAFTFGQKLDP----LANIAKAGPGPA 311
           +VR YCL+     G  +D S     P SR P  P F   Q   P      N+ K   GP 
Sbjct: 49  IVRDYCLVKHGDSGYRMDSSLMTSLPHSRNP--PIFEAIQGEQPSDIDTLNLKKVKSGPT 106

Query: 312 S 314
           S
Sbjct: 107 S 107


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +3

Query: 189 NIDPSQGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPP 368
           N  P Q  P  +SR+      T   +L+PLA I    P P+             T +M P
Sbjct: 71  NFFPFQSGPFSKSRREN----TLLPRLNPLAPIGARQPNPSIPQQFSKPINESGTGTMGP 126

Query: 369 VLGE 380
            +GE
Sbjct: 127 AVGE 130


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 26/84 (30%), Positives = 33/84 (39%)
 Frame = +3

Query: 180 VGDNIDPSQGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYS 359
           +G+    S   PPP    PR+ A      L P    A   P P S         AP+T  
Sbjct: 327 IGNGSSNSSLPPPPPP--PRSNA-AGSIPLPPQGRSAPPPPPPRS---------APSTGR 374

Query: 360 MPPVLGEAKEGSKRAAPAFSITGR 431
            PP L  ++  S   AP  +I GR
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPGR 398


>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 94  SLICFTFICFKLSIFSIRPCTFVQLTW 14
           SL C+   CF   +  ++P  FV L W
Sbjct: 78  SLACYAIACFMFPVLVLKPRKFV-LLW 103


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = -1

Query: 223 SGGGLPWEGSMLSPTEIVYSKQYFLTNINLFKYTHTKKL--KD-QP-SLICFTFICFKLS 56
           SGG +PW         I  ++QYF   +   +Y H + +  +D +P +L+  +  C K+S
Sbjct: 225 SGGEVPWTDCDSPVLSISEARQYFRDVVLGLEYLHYQGIIHRDIKPANLLLNSSNCVKIS 284

Query: 55  IFSI 44
            F +
Sbjct: 285 DFGV 288


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +3

Query: 330 MTAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALT 509
           +  + P+ YS+   L      S  A   +++ GRG  S  + L    G  TT+  A+ L 
Sbjct: 421 LVEEIPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLR--RGLETTEIVASELP 478

Query: 510 KRPPA 524
             P A
Sbjct: 479 GAPIA 483


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 294  AGPGPASYNTEGMTAKAPNTYSMPPV-LGEAKE 389
            + P P   N+ GM+A   NT S  PV L E  E
Sbjct: 1619 SSPPPQPGNSSGMSAMNTNTTSTTPVSLSELSE 1651


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 294  AGPGPASYNTEGMTAKAPNTYSMPPV-LGEAKE 389
            + P P   N+ GM+A   NT S  PV L E  E
Sbjct: 1619 SSPPPQPGNSSGMSAMNTNTTSTTPVSLSELSE 1651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,458
Number of Sequences: 5004
Number of extensions: 45710
Number of successful extensions: 151
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)