Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d22f
(544 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16) 36 0.016
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35) 30 1.4
SB_32128| Best HMM Match : Collagen (HMM E-Value=0.31) 29 1.9
SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 28 5.7
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 28 5.7
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 28 5.7
SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2) 27 7.5
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_15988| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 27 9.9
SB_10932| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +3
Query: 342 APNTYSMPPVLGEAKEGSKRAAPAFSITGR---GKFSEAKGLMPGPGTYTTDRAAAALTK 512
+PN+YS+P + G K +K +A A+S+TGR G FSE PGPGTY + K
Sbjct: 258 SPNSYSLPALTGP-KVVNKTSAAAYSLTGRSNNGGFSEDLQKTPGPGTYKV-TSPDKYRK 315
Query: 513 RPPAFTMAPR 542
R A++M R
Sbjct: 316 RMAAYSMNGR 325
Score = 35.1 bits (77), Expect = 0.037
Identities = 29/112 (25%), Positives = 46/112 (41%)
Frame = +3
Query: 207 GKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLGEAK 386
GK + RK PAF+FGQ+ + PGP G+T
Sbjct: 156 GKKNHDVRKTTNPAFSFGQRHRDF--FTQISPGPKYMVPSGLT----------------- 196
Query: 387 EGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAPR 542
+ K PAFS+ R K + PGPG Y+ ++ + ++ P+++ R
Sbjct: 197 QCGKDGTPAFSLYSRAKEKNLSHV-PGPGEYSPEKHSIPHERKAPSYSFGSR 247
>SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16)
Length = 97
Score = 36.3 bits (80), Expect = 0.016
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +3
Query: 300 PGPASYNTEGMTAKAPN---TYSMPPVLGEAKEGSKRAAPAFSITGR---GKFSEAKGLM 461
P P +Y+ E + + YSM K +K ++ ++S+TGR G FSE
Sbjct: 6 PAPGAYSPEKVHPQGERHAPAYSMGGRTRYRKLPNKYSSASYSMTGRATTGSFSEDLAKA 65
Query: 462 PGPGTYTTDRAAAALTKRPPAFTMAPR 542
PGPG Y T R P ++M R
Sbjct: 66 PGPGKYNT-TIPNTYKNRQPQYSMLGR 91
>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 562
Score = 33.5 bits (73), Expect = 0.11
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Frame = +3
Query: 222 ESRKPRAPAFTFGQKLDPLANIAKAGPGPASY--------NTEGMTAKAP------NTYS 359
+ RK + PA++FG KL + GPGPA T+G A N
Sbjct: 353 DPRKHKKPAWSFGLKLGLKSQ--NVGPGPAYLIPARITRTGTDGTPAYTLHDRTQLNKAF 410
Query: 360 MPPVLGEAK----EGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAA 500
P G K + +K+ PA+S+ GR + L PGPG ++ ++ +
Sbjct: 411 STPAPGTYKVHNPDYNKKRMPAYSMNGRNYMTGDNTLKPGPGAHSPEKGGS 461
>SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 32.7 bits (71), Expect = 0.20
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +3
Query: 258 GQKLDPLANIAKAGPGPASYNTEGM--TAKAPNTYSMPPVLGEAKEGSKRAAPA-FSITG 428
G++L P A+ + GP Y EG+ TA AP + + P +G A EG A A SITG
Sbjct: 228 GERLGPTAHAPASNTGPVGYAGEGLGPTAHAPASITGP--VGYAGEGLGPTAHAPASITG 285
Query: 429 RGKFSEAKGLMP 464
++ +GL P
Sbjct: 286 PVGYA-GEGLGP 296
Score = 30.7 bits (66), Expect = 0.80
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Frame = +3
Query: 261 QKLDPLANIAKAGPGPASYNTE--GMTAKAPNTYSMPPVLGEAKEGSKRAAPAFSITG-- 428
++L P A+ + GP Y + G TA AP + + P + + GS APA SITG
Sbjct: 103 ERLGPTAHAPASITGPVGYADKRLGPTAHAPASITGPVGYADERLGSTTHAPA-SITGPV 161
Query: 429 ------RGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAP 539
G + A + GP Y +R T PA P
Sbjct: 162 GYAGERLGPTAHAPASITGPVGYADERLGP--TAHAPASITGP 202
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +3
Query: 261 QKLDPLANIAKAGPGPASYNTEGM--TAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRG 434
++L P A+ + GP Y EG+ TA AP + + P + G APA + G
Sbjct: 187 ERLGPTAHAPASITGPVGYADEGLGPTAHAPASITGPVGYAGERLGPTAHAPASNTGPVG 246
Query: 435 KFSEAKG 455
E G
Sbjct: 247 YAGEGLG 253
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 31.5 bits (68), Expect = 0.46
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Frame = +3
Query: 216 PPESRKPRAPAFTFGQ---KLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLGEAK 386
PP RKP A + + + ++ PG + Y + ++PN P G
Sbjct: 2787 PPRRRKPTARSIRWKELHCNTSSSSSSQNTSPGTSPYTSSHQIGRSPNHALPHPSTGSPS 2846
Query: 387 EGSKRAAPAFSI-TGRGKFSEAKGLMPGP 470
+ S R + + S + +G F L P P
Sbjct: 2847 QPSSRPSRSSSFYSAQGSFHSFTSLSPKP 2875
>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
Length = 978
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -1
Query: 124 THTKKLKDQPSLICFTFICFKLSIFSIRPCTFVQLTWYT 8
TH K+ DQ CF + S RPC + L W T
Sbjct: 539 THKAKITDQIKSNVKVLDCFTNCLLSPRPCVLMGLLWQT 577
>SB_32128| Best HMM Match : Collagen (HMM E-Value=0.31)
Length = 330
Score = 29.5 bits (63), Expect = 1.9
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Frame = +3
Query: 261 QKLDPLANIAKAGPGPASYNTEGM--TAKAPNTYSMPPVLGEAKEGSKRAAPAF-SITG- 428
++L P A+ + GP Y EG+ TA AP + + P +G A EG A A SITG
Sbjct: 137 ERLGPTAHAPASITGPVGYAGEGLGPTAHAPASITGP--VGYAGEGLGPTAHALASITGP 194
Query: 429 -------RGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAP 539
G + A + GP Y +R T PA P
Sbjct: 195 VGYTGERLGPTAHAPASITGPVGYADERLGP--TAHAPASITGP 236
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 258 GQKLDPLANIAKAGPGPASYNTEGM--TAKAPNTYSMPPVLGEAKEGSKRAAPA-FSITG 428
G+ L P A+ + GP Y EG+ TA AP + + P +G A EG A A SITG
Sbjct: 241 GEGLGPTAHAPASITGPVGYAGEGLGPTAHAPASITGP--VGYAGEGLGPTAHAPASITG 298
Query: 429 RGKFSEAKGLMP 464
++ +GL P
Sbjct: 299 PVGYA-GEGLGP 309
Score = 28.7 bits (61), Expect = 3.2
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +3
Query: 261 QKLDPLANIAKAGPGPASYNTEGM--TAKAPNTYSMPPVLGEAKEGSKRAAPA-FSITGR 431
++L P A+ + GP Y EG+ TA AP + + P +G A EG A A SITG
Sbjct: 221 ERLGPTAHAPASITGPVGYAGEGLGPTAHAPASITGP--VGYAGEGLGPTAHAPASITGP 278
Query: 432 GKFSEAKGLMP 464
++ +GL P
Sbjct: 279 VGYA-GEGLGP 288
>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +3
Query: 201 SQGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLGE 380
S+GKP P S K + P T + P K P +Y+ T + + P + G+
Sbjct: 308 SEGKPKPRSEKEKQP--TRKRVKRP----EKLNKRPGAYSNLYGTFDIMSLRNCPVLPGQ 361
Query: 381 AKEGSKRAAPAFS 419
K G++R +P S
Sbjct: 362 VKSGNRRESPQAS 374
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 27.9 bits (59), Expect = 5.7
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 198 PSQGKPPPES-RKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVL 374
P GKPPP S KP TFG + + GP P ++ G P S PP
Sbjct: 169 PPMGKPPPPSGNKP-----TFGN-----SRTSTNGPPPPPHSRHGSAPPPPERSSGPPPP 218
Query: 375 GEAKEGSKRA 404
+ S+R+
Sbjct: 219 PPGRGPSQRS 228
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 27.9 bits (59), Expect = 5.7
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 198 PSQGKPPPES-RKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVL 374
P GKPPP S KP TFG + + GP P ++ G P S PP
Sbjct: 81 PPMGKPPPPSGNKP-----TFGN-----SRTSTNGPPPPPHSRHGSAPPPPERSSGPPPP 130
Query: 375 GEAKEGSKRA 404
+ S+R+
Sbjct: 131 PPGRGPSQRS 140
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 372 LGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAA 497
+G K KR +PA TG GK S AK P P D+++
Sbjct: 626 IGSNKRPGKRTSPA---TGHGKSSPAKKRSPKPVNSPVDKSS 664
>SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)
Length = 465
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +3
Query: 276 LANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGK--FSEA 449
L+ + GPGPAS K + S P +G KE AP G + F
Sbjct: 207 LSRLLAKGPGPASLIVHRKLIK-ESEMSKKPTVGHQKEAGYHKAPEREFLGEKRLLFERK 265
Query: 450 KG 455
KG
Sbjct: 266 KG 267
>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 141 ILVRKYCLLYTISVGDNIDPSQGKPPPESRKPR 239
++ ++ C+L +S I P+Q KP P KP+
Sbjct: 240 VIPKEDCVLEMVSPKKTITPAQVKPSPPPTKPK 272
>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 768
Score = 27.5 bits (58), Expect = 7.5
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +3
Query: 252 TFGQKLDPLANIAKAGPGPASYNTEGMT-AKAPNTYSMPPVLGEAKEGSKRAAPAFSITG 428
T G+ +D L NI G G + N + K + ++ + G R+A +
Sbjct: 495 TIGKSIDTLKNIE--GTGVYTLNRSALVRTKGKSIDTLKSIEGTGVYTLNRSA---LVRT 549
Query: 429 RGKFSEAKGLMPGPGTYTTDRAAAALTK 512
+GK + + G G YT +R+A TK
Sbjct: 550 KGKSIDTLKSIEGTGVYTLNRSALVRTK 577
>SB_15988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 138 LILVRKYCLLYTISVGDNIDPSQ 206
LI V Y +YT+SV D +DP +
Sbjct: 69 LIYVHIYTYMYTMSVSDKLDPQR 91
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.5 bits (58), Expect = 7.5
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +3
Query: 309 ASYNTEGMTAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTD 488
A T G T + P + P G A R++PA S ++ + GP
Sbjct: 5903 AKRRTNGSTTRTPEVKATPSRRGGAVSRIPRSSPAGSPATSFTRERSRDKLSGP------ 5956
Query: 489 RAAAALTK-RPPAFT 530
AAA LT+ R P+FT
Sbjct: 5957 -AAATLTRERSPSFT 5970
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Frame = +3
Query: 174 ISVGDNIDPSQGKPPPESRKPRA-PAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPN 350
++ N Q PP + P++ P L P + ++ P P S + + + P
Sbjct: 245 VNTPPNAQAQQMTPPSSAAPPQSLPGLQTSPSLQPPSQ--RSTPSPQSMSA--LHSGKPK 300
Query: 351 TYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMP 464
MPP + PAF+ R S G P
Sbjct: 301 RPGMPPSPSVPHQSQPAVPPAFATPPRSGASTPSGAPP 338
>SB_10932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +3
Query: 201 SQGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLGE 380
+QG PP + R FT L I K P + ++E T + + P ++G+
Sbjct: 401 NQGSPPSVTLSIRGEKFTMDSNGKTLRRINKEKPNAMASSSE--TPNTNQSSASPKLVGK 458
Query: 381 AKEGSKR 401
+ KR
Sbjct: 459 RRSSMKR 465
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,902,393
Number of Sequences: 59808
Number of extensions: 343571
Number of successful extensions: 1064
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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