Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d22f
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical ... 33 0.10
AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical ... 33 0.10
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical pr... 31 0.71
X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1 prot... 31 0.71
AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1 ... 31 0.71
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 0.71
U58746-5|AAB00625.1| 310|Caenorhabditis elegans Hypothetical pr... 28 3.8
AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical... 28 3.8
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical pr... 27 8.7
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 27 8.7
>AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5a protein.
Length = 599
Score = 33.5 bits (73), Expect = 0.10
Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 2/120 (1%)
Frame = +3
Query: 186 DNIDPSQGKPPPESRKPRAPAFTFGQKLDP--LANIAKAGPGPASYNTEGMTAKAPNTYS 359
+ I S K P E R P T G P NI P + + A+ T +
Sbjct: 214 ETIPTSPAKDPSEGYVTR-PISTVGHPSPPPLFPNI------PVPQRSPPVVARVFTTST 266
Query: 360 MPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAP 539
M PV+ + P F I F + G+ PGT T + A+ P A+ AP
Sbjct: 267 MAPVMFTFPTTTTPLMPLFPIIPNVHFKQGVGVPFAPGTLPTTKVDASKWNDPSAYATAP 326
>AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5b protein.
Length = 601
Score = 33.5 bits (73), Expect = 0.10
Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 2/120 (1%)
Frame = +3
Query: 186 DNIDPSQGKPPPESRKPRAPAFTFGQKLDP--LANIAKAGPGPASYNTEGMTAKAPNTYS 359
+ I S K P E R P T G P NI P + + A+ T +
Sbjct: 216 ETIPTSPAKDPSEGYVTR-PISTVGHPSPPPLFPNI------PVPQRSPPVVARVFTTST 268
Query: 360 MPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTTDRAAAALTKRPPAFTMAP 539
M PV+ + P F I F + G+ PGT T + A+ P A+ AP
Sbjct: 269 MAPVMFTFPTTTTPLMPLFPIIPNVHFKQGVGVPFAPGTLPTTKVDASKWNDPSAYATAP 328
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 31.1 bits (67), Expect = 0.54
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Frame = +3
Query: 198 PSQGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLG 377
PS K PP +R+ R+P+ + + +K+ P PA +K+P PP
Sbjct: 308 PSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSP-----PPAPK 362
Query: 378 EAKEGSK------RAAPAFSIT---GRGKFSEAKGLMPGPGTY---TTDRAAAALTKRPP 521
AK SK R +P+ S + R + S +K P P R + + +K PP
Sbjct: 363 RAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSASKSPP 422
Query: 522 A 524
A
Sbjct: 423 A 423
>Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical
protein M163.3 protein.
Length = 208
Score = 30.7 bits (66), Expect = 0.71
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 198 PSQGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLG 377
P+ K P ++KP A G+K AK A+ + + AK+P + P
Sbjct: 121 PAAAKKPAAAKKPAAAKKATGEKKAKKPAAAKPKKA-ATGDKKVKKAKSPKKVAKPAAKK 179
Query: 378 EAKEGSKRAAP 410
AK +K+AAP
Sbjct: 180 VAKSPAKKAAP 190
>X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1
protein.
Length = 208
Score = 30.7 bits (66), Expect = 0.71
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 198 PSQGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLG 377
P+ K P ++KP A G+K AK A+ + + AK+P + P
Sbjct: 121 PAAAKKPAAAKKPAAAKKATGEKKAKKPAAAKPKKA-ATGDKKVKKAKSPKKVAKPAAKK 179
Query: 378 EAKEGSKRAAP 410
AK +K+AAP
Sbjct: 180 VAKSPAKKAAP 190
>AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1
protein.
Length = 208
Score = 30.7 bits (66), Expect = 0.71
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +3
Query: 198 PSQGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLG 377
P+ K P ++KP A G+K AK A+ + + AK+P + P
Sbjct: 121 PAAAKKPAAAKKPAAAKKATGEKKAKKPAAAKPKKA-ATGDKKVKKAKSPKKVAKPAAKK 179
Query: 378 EAKEGSKRAAP 410
AK +K+AAP
Sbjct: 180 VAKSPAKKAAP 190
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 0.71
Identities = 24/71 (33%), Positives = 28/71 (39%)
Frame = +3
Query: 198 PSQGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVLG 377
PS PPP P P+ L P AN G + T + N YSMPP +
Sbjct: 1385 PSMILPPPP---PPLPSEEKKNPL-PTANNGHTDNGSDDIDRNVPTPPSQNQYSMPPPVM 1440
Query: 378 EAKEGSKRAAP 410
EGS R P
Sbjct: 1441 GGHEGSWRGGP 1451
>U58746-5|AAB00625.1| 310|Caenorhabditis elegans Hypothetical
protein R05G6.4 protein.
Length = 310
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 208 PWEGSMLSPTEIVYSKQYFLTNINLFKYTHTKKLKD 101
P ++SPT ++ ++ L NI K + KKLK+
Sbjct: 52 PCRNPVISPTGYIFDREAILENILAQKKAYAKKLKE 87
>AC024790-10|AAF60632.2| 129|Caenorhabditis elegans Hypothetical
protein Y47D7A.11 protein.
Length = 129
Score = 28.3 bits (60), Expect = 3.8
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = +3
Query: 306 PASYNTEGMTAKAPNTYSMPPVLGEAKEGSKRAAPAFSITGRGKFSEAKGLMPGPGTYTT 485
P SY T AP TY PP + S PA S+ FS+ + + YTT
Sbjct: 36 PPSYPTPKKYPVAP-TYPSPPAYAQKPSYSAPPPPAPSVYSSSSFSDNE--VASDSEYTT 92
Query: 486 DRAAAALTKRPPAFT 530
+ KR A T
Sbjct: 93 ASPNSEYRKRAKART 107
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 27.5 bits (58), Expect = 6.6
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Frame = +3
Query: 198 PSQGKPPPESRKPRA-PAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVL 374
P+ P P + KP A PA T G P A P + +T++AP S P
Sbjct: 229 PAPAVPRPVAGKPSARPATTTGTATRPTRPAVPAASAPRA-----LTSRAPAGPSRPTTT 283
Query: 375 GEAKEGSKRAAP--AFSITGRGKFSEAKGLMPGP 470
A + A P A +T S+A P P
Sbjct: 284 RNAAPAPRTAVPSRATVLTKTAPASKAPTRAPVP 317
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 27.5 bits (58), Expect = 6.6
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Frame = +3
Query: 198 PSQGKPPPESRKPRA-PAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVL 374
P+ P P + KP A PA T G P A P + +T++AP S P
Sbjct: 229 PAPAVPRPVAGKPSARPATTTGTATRPTRPAVPAASAPRA-----LTSRAPAGPSRPTTT 283
Query: 375 GEAKEGSKRAAP--AFSITGRGKFSEAKGLMPGP 470
A + A P A +T S+A P P
Sbjct: 284 RNAAPAPRTAVPSRATVLTKTAPASKAPTRAPVP 317
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 27.5 bits (58), Expect = 6.6
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Frame = +3
Query: 198 PSQGKPPPESRKPRA-PAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKAPNTYSMPPVL 374
P+ P P + KP A PA T G P A P + +T++AP S P
Sbjct: 229 PAPAVPRPVAGKPSARPATTTGTATRPTRPAVPAASAPRA-----LTSRAPAGPSRPTTT 283
Query: 375 GEAKEGSKRAAP--AFSITGRGKFSEAKGLMPGP 470
A + A P A +T S+A P P
Sbjct: 284 RNAAPAPRTAVPSRATVLTKTAPASKAPTRAPVP 317
>Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.6 protein.
Length = 316
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 535 AIVKAGGRFVNAAAALSVVYVPGPGINPLASENFPRPVILKAGAALLLPS 386
A++ +F + L VV+VP P + + F PV++ A LL+ S
Sbjct: 52 AVLILSSQFTASLIQLFVVFVPVPAMIAVNQPYFVNPVMINVPAFLLILS 101
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 213 PPPESRKPRAPAFTFGQKLDPLANIAKAGPGP 308
PPP P P FG PLA I GP P
Sbjct: 58 PPPPCFGPACPPPCFGPACVPLAPIIVNGPPP 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,825
Number of Sequences: 27780
Number of extensions: 268620
Number of successful extensions: 893
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -