Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20r
         (764 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q12887 Cluster: Protoheme IX farnesyltransferase, mitoc...    35   1.9  
UniRef50_Q235C0 Cluster: Intracellular protein transport protein...    35   2.5  
UniRef50_Q4E558 Cluster: Putative uncharacterized protein; n=2; ...    34   4.4  
UniRef50_Q4FZ10 Cluster: Putative uncharacterized protein; n=3; ...    33   7.8  

>UniRef50_Q12887 Cluster: Protoheme IX farnesyltransferase,
           mitochondrial precursor; n=28; Euteleostomi|Rep:
           Protoheme IX farnesyltransferase, mitochondrial
           precursor - Homo sapiens (Human)
          Length = 443

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 669 RLFSGLFGGSREVRKLRSTVLFSFSTFVHFHRLINHRYYTFKPEEILNRQQIIQLHSSRS 490
           RL +G  GGS    + R T+  S   F+H  R +N ++ TF+    L R  + QL+ S +
Sbjct: 11  RLLTGCVGGSVWYLE-RRTIQDSPHKFLHLLRNVNKQWITFQHFSFLKRMYVTQLNRSHN 69

Query: 489 RQ 484
           +Q
Sbjct: 70  QQ 71


>UniRef50_Q235C0 Cluster: Intracellular protein transport protein USO,
            putative; n=1; Tetrahymena thermophila SB210|Rep:
            Intracellular protein transport protein USO, putative -
            Tetrahymena thermophila SB210
          Length = 2064

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 10   KCERNKNQITLLFFYKYLLLNCFIRFNFNSITFILLFVIFYKNSCSQL 153
            K   +K ++TL + +  +LL CF  F    I F ++   FY+N   Q+
Sbjct: 1885 KSATDKGEVTLNYPFSKILLKCFFLFLLERIIFTVVIAFFYENYQDQI 1932


>UniRef50_Q4E558 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 823

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 7   IKCERNKNQITLLFFYKYLLLNCFIRFN-FNSITFILLFVIFYKNSCSQLASTM 165
           +KC  N     L FF  +LL   +  F    S TF + F I +  +C +L ST+
Sbjct: 17  VKCTHNPFGCLLFFFILFLLYYYYYNFGPLCSFTFAMEFYILWSGACVRLPSTL 70


>UniRef50_Q4FZ10 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 1051

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 24/79 (30%), Positives = 34/79 (43%)
 Frame = -2

Query: 430 SFGGARAAVS*SHPSWLSICSSTGPAATGKASEPLVMLRS*KREV*AQSFSKFYSKRKSL 251
           S   + AA   S P      +S+ P + G A   L++LR   R V  Q       +R SL
Sbjct: 430 SSSSSTAATPPSRPRRAEDSTSSAPESLGAAPRQLLLLRLLWRLVHIQQLFFSIGRRASL 489

Query: 250 FRPVVDINVALKEISHGVR 194
            R  VD+ V      +G+R
Sbjct: 490 PRTAVDVYVQSSNCQYGIR 508


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,856,709
Number of Sequences: 1657284
Number of extensions: 13997791
Number of successful extensions: 33069
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33061
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)