Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20r
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    30   0.42 
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   9.0  

>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 590 NVEKLNKTVERNFLTSRDPPKSPLKSLR 673
           + ++L K V+R++ T R P  +PLKSL+
Sbjct: 73  SADELKKLVDRSYSTFRHPETTPLKSLK 100


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 636 EVRKLRSTVLFSFSTFVHFHRLINHRYYTFKPEEILNR 523
           E+      V   FS+   F RL+ H YY  +    LNR
Sbjct: 374 ELESFGELVPVPFSSTKAFERLLPHLYYYLRGPAFLNR 411


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 136 NSCSQLASTM*NSTGNTSPTGLREIS 213
           NS SQ AS +  +T  T P G  EIS
Sbjct: 6   NSNSQFASDIEKATSETLPAGSEEIS 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,582
Number of Sequences: 5004
Number of extensions: 59886
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)