Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20r
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006           28   9.4  
05_05_0133 + 22614219-22614651,22614767-22615671,22615918-226162...    28   9.4  

>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
          Length = 585

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 685 WWSFTETFQWTFWRIPRS 632
           W SF E  +WTF R PRS
Sbjct: 305 WGSFIEPLKWTFNRPPRS 322


>05_05_0133 +
           22614219-22614651,22614767-22615671,22615918-22616224,
           22616307-22616380
          Length = 572

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 241 VVDINVALKEISHGVRSGTCC 179
           +  +N+AL+EIS  + SG CC
Sbjct: 243 ISSVNLALEEISRRILSGMCC 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,338,172
Number of Sequences: 37544
Number of extensions: 393369
Number of successful extensions: 861
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)