Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20r
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_27832| Best HMM Match : DUF1603 (HMM E-Value=5.3)                   28   9.5  
SB_19802| Best HMM Match : fn3 (HMM E-Value=0)                         28   9.5  
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_59383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -1

Query: 728 YXMLLDEILYN----LSKMVVVYGDFSVDFLEDPEKLGSYVQRFYLVFPHL 588
           Y  LLDE+  +    +S+ VVV GD + D LE P  L + ++++  +F  L
Sbjct: 152 YIALLDEMFSHASSAISQQVVVLGDLNFDLLERP--LPAPIKQYLSIFDSL 200


>SB_27832| Best HMM Match : DUF1603 (HMM E-Value=5.3)
          Length = 215

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +1

Query: 34  ITLLFFY--KYLLLNCFIRFNF-NSITFIL--LFVIFYKNSCSQLASTM*NSTGNTSPTG 198
           IT  FF   K   L  +I F F +S + IL  +F+ FY NSC +L +    ST N +   
Sbjct: 103 ITKEFFLRKKNATLITYIVFAFISSASCILSNVFIYFYSNSCGKLITQQTASTDNINIVE 162

Query: 199 LREISPL 219
            R   PL
Sbjct: 163 PRFDEPL 169


>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1075

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 226  VALKEISHGVRSGTCCQLNFTLCLLADYKNFYRKLQII 113
            V +K+ +H     TCC+L  TLC+    ++F +K  ++
Sbjct: 959  VIVKQSTHPAEDPTCCRLR-TLCMYDIQRSFNQKTHML 995


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 280 SKFYSKRKSLFRPVVDINVALKEISHGVRS 191
           +K YS R + F+ +   N+AL+E   G+R+
Sbjct: 399 AKLYSNRAATFQKLAAFNLALEEAKEGLRA 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,885,864
Number of Sequences: 59808
Number of extensions: 425197
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)