Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20r
         (764 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82010-1|AAC51330.1|  443|Homo sapiens heme A: farnesyltransfera...    35   0.28 
U09466-1|AAA21148.1|  443|Homo sapiens heme A:farnesyltransferas...    35   0.28 
BT006985-1|AAP35631.1|  443|Homo sapiens COX10 homolog, cytochro...    35   0.28 
BC006394-1|AAH06394.1|  443|Homo sapiens COX10 homolog, cytochro...    35   0.28 
BC000060-1|AAH00060.1|  443|Homo sapiens COX10 homolog, cytochro...    35   0.28 

>U82010-1|AAC51330.1|  443|Homo sapiens heme A: farnesyltransferase
           protein.
          Length = 443

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 669 RLFSGLFGGSREVRKLRSTVLFSFSTFVHFHRLINHRYYTFKPEEILNRQQIIQLHSSRS 490
           RL +G  GGS    + R T+  S   F+H  R +N ++ TF+    L R  + QL+ S +
Sbjct: 11  RLLTGCVGGSVWYLE-RRTIQDSPHKFLHLLRNVNKQWITFQHFSFLKRMYVTQLNRSHN 69

Query: 489 RQ 484
           +Q
Sbjct: 70  QQ 71


>U09466-1|AAA21148.1|  443|Homo sapiens heme A:farnesyltransferase
           protein.
          Length = 443

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 669 RLFSGLFGGSREVRKLRSTVLFSFSTFVHFHRLINHRYYTFKPEEILNRQQIIQLHSSRS 490
           RL +G  GGS    + R T+  S   F+H  R +N ++ TF+    L R  + QL+ S +
Sbjct: 11  RLLTGCVGGSVWYLE-RRTIQDSPHKFLHLLRNVNKQWITFQHFSFLKRMYVTQLNRSHN 69

Query: 489 RQ 484
           +Q
Sbjct: 70  QQ 71


>BT006985-1|AAP35631.1|  443|Homo sapiens COX10 homolog, cytochrome
           c oxidase assembly protein, heme A: farnesyltransfera
           protein.
          Length = 443

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 669 RLFSGLFGGSREVRKLRSTVLFSFSTFVHFHRLINHRYYTFKPEEILNRQQIIQLHSSRS 490
           RL +G  GGS    + R T+  S   F+H  R +N ++ TF+    L R  + QL+ S +
Sbjct: 11  RLLTGCVGGSVWYLE-RRTIQDSPHKFLHLLRNVNKQWITFQHFSFLKRMYVTQLNRSHN 69

Query: 489 RQ 484
           +Q
Sbjct: 70  QQ 71


>BC006394-1|AAH06394.1|  443|Homo sapiens COX10 homolog, cytochrome
           c oxidase assembly protein, heme A: farnesyltransfera
           protein.
          Length = 443

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 669 RLFSGLFGGSREVRKLRSTVLFSFSTFVHFHRLINHRYYTFKPEEILNRQQIIQLHSSRS 490
           RL +G  GGS    + R T+  S   F+H  R +N ++ TF+    L R  + QL+ S +
Sbjct: 11  RLLTGCVGGSVWYLE-RRTIQDSPHKFLHLLRNVNKQWITFQHFSFLKRMYVTQLNRSHN 69

Query: 489 RQ 484
           +Q
Sbjct: 70  QQ 71


>BC000060-1|AAH00060.1|  443|Homo sapiens COX10 homolog, cytochrome
           c oxidase assembly protein, heme A: farnesyltransfera
           protein.
          Length = 443

 Score = 35.1 bits (77), Expect = 0.28
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -3

Query: 669 RLFSGLFGGSREVRKLRSTVLFSFSTFVHFHRLINHRYYTFKPEEILNRQQIIQLHSSRS 490
           RL +G  GGS    + R T+  S   F+H  R +N ++ TF+    L R  + QL+ S +
Sbjct: 11  RLLTGCVGGSVWYLE-RRTIQDSPHKFLHLLRNVNKQWITFQHFSFLKRMYVTQLNRSHN 69

Query: 489 RQ 484
           +Q
Sbjct: 70  QQ 71


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,616,291
Number of Sequences: 237096
Number of extensions: 2141326
Number of successful extensions: 7838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7835
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)