Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20r
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    29   2.7  
U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z54216-4|CAA90947.1|  421|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 22  NKNQITLLFFYKYLLLNCFIRFNFNSITFILLFVIF 129
           N+N    LF+Y++L   CF  F F +I + +L + F
Sbjct: 36  NRNDDMQLFYYRFLTDTCFGTFLFCNIVYTILSMNF 71


>U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical
           protein C04E6.11 protein.
          Length = 995

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 142 CSQLASTM*NSTGNTSPTGLREISPLERHLCPQQAETKISV*NKTLRSS 288
           CSQL   M N T   S    +    +ERH+C +   T +S+   T R S
Sbjct: 319 CSQLVEQMLNCTLRDSGFFRKLFREIERHICSRHYYTALSLLEDTKRVS 367


>Z54216-4|CAA90947.1|  421|Caenorhabditis elegans Hypothetical
           protein T24H10.5 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -1

Query: 404 KLIPPLLAEHLLVHRSCCNWKGLRA--TSNASIIKKRGMSTELLKVLF*TEIF--VSACC 237
           +LI  L     +V  +C  W    A  TS  +    R +S ELL +   T+IF  VS CC
Sbjct: 326 QLITDLKTTKPMVENNCKFWADCIAKLTSQKAYRSVRTLSAELLPMCLGTQIFIEVSKCC 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,693,427
Number of Sequences: 27780
Number of extensions: 339015
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)