Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20f
         (574 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q231U2 Cluster: Putative uncharacterized protein; n=1; ...    35   1.2  
UniRef50_A1IC04 Cluster: Putative uncharacterized protein precur...    33   3.6  
UniRef50_UPI00006CB382 Cluster: hypothetical protein TTHERM_0065...    33   4.8  
UniRef50_A2FKQ0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q9V263 Cluster: Phosphate uptake regulator, phoU family...    33   4.8  
UniRef50_Q8ILR0 Cluster: Putative uncharacterized protein; n=1; ...    33   6.3  

>UniRef50_Q231U2 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1386

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 34/129 (26%), Positives = 57/129 (44%)
 Frame = +3

Query: 177  FTEIFKSINSTKHNF*PKIIYSFGYNMEFEVKSEINNEVLLCRTCLNGEQKLKPLGQLSA 356
            F +IF  +N  K     +II+    N+E+     +N    + +  LN  QK   L Q   
Sbjct: 674  FQKIFNKVNRFKSKK-LEIIFQETQNLEYVCSDLLNICGKVIKLKLNFLQKSSSLQQSDQ 732

Query: 357  IFRKLFSDCKGLFDLEMIEICLECEAMLKRIDDFYNRVQRAIGLLLSGTKFKSSSLSFPE 536
             F+K+FS  +   +++ ++I L+ E   ++I +     Q+ I  L+     K   L   E
Sbjct: 733  SFQKIFSVVQKSCEIQNLQIQLKREESNQKILN-----QQLINYLIKQQSIKYFKLQIEE 787

Query: 537  TTKQCVQTE 563
            T K   Q E
Sbjct: 788  TPKNLDQQE 796


>UniRef50_A1IC04 Cluster: Putative uncharacterized protein
           precursor; n=1; Candidatus Desulfococcus oleovorans
           Hxd3|Rep: Putative uncharacterized protein precursor -
           Candidatus Desulfococcus oleovorans Hxd3
          Length = 509

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 269 YFKFHIVTETINYFWLKVVFCAVYRFKYFRKS*KLHFKLIFMYGTVLILYPAYFLKRGD 93
           YF+F +V     Y  L +   A Y+     K+  L F L F YG +   +    + RGD
Sbjct: 314 YFRFSLVAFPFTYIVLAIGIAACYKGNRLAKTLCLLFVLFFSYGNITRTHALITIGRGD 372


>UniRef50_UPI00006CB382 Cluster: hypothetical protein
           TTHERM_00658690; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00658690 - Tetrahymena
           thermophila SB210
          Length = 1947

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -3

Query: 290 LIVYFTFYFKFHIVTETINYFWLKVVFCAVYRFKYFRKS*KLHFKLIFMYGTVLILY 120
           +IV++ F+   HI    I  + +  V+C     +YF     L  ++++MYG + IL+
Sbjct: 232 IIVFYVFFSYIHIGESFIAVYIIAFVYCLTQLKEYFLNFPVLGKQILWMYGDLNILF 288


>UniRef50_A2FKQ0 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 1612

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +3

Query: 255  MEFEVKSEINNEVLLCRTCLNGEQKLKPLGQLSAIFRKLFSDCKGLFDLEMIEICLECEA 434
            ++FE KSE+ +    CR  L      KP G L + F +L S  K   D+   + C E + 
Sbjct: 1367 IKFENKSEMKSTSEFCRQILQPLTDSKPFGNLRS-FNELLSKVKLFGDVNFEKCCTENQD 1425

Query: 435  MLK 443
             LK
Sbjct: 1426 QLK 1428


>UniRef50_Q9V263 Cluster: Phosphate uptake regulator, phoU family;
           n=4; Thermococcaceae|Rep: Phosphate uptake regulator,
           phoU family - Pyrococcus abyssi
          Length = 303

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 24/84 (28%), Positives = 42/84 (50%)
 Frame = +3

Query: 246 GYNMEFEVKSEINNEVLLCRTCLNGEQKLKPLGQLSAIFRKLFSDCKGLFDLEMIEICLE 425
           G  + FE +  I  + LL    +N  + LK   ++SAI   +FSD + +   +  E+  +
Sbjct: 110 GVEIVFEEQQRIVAKSLLDEEEINLVELLK---RMSAIVTSMFSDLELIIQGQNGEVLRD 166

Query: 426 CEAMLKRIDDFYNRVQRAIGLLLS 497
            + +   +D FY  + RA+  LLS
Sbjct: 167 IKDLENELDRFYFLIMRAVNRLLS 190


>UniRef50_Q8ILR0 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1166

 Score = 32.7 bits (71), Expect = 6.3
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +3

Query: 228  KIIYSFGYNMEFEVKSEINNEVLLCRTCLNG-EQKLKPLGQLSAIFRKLFSDCKGLFDLE 404
            K +YS  Y+  ++     N++ ++C     G EQ +K +GQ+       F+D K   DL+
Sbjct: 1027 KNLYSLLYSKNYDDLLS-NHDYVICLKNYEGIEQYVKVIGQIKVKRNAFFTDIKHEIDLK 1085

Query: 405  MIEICLECEAMLK 443
            M++  +E + + K
Sbjct: 1086 MLDNIIEIKTLDK 1098


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,977,416
Number of Sequences: 1657284
Number of extensions: 10668285
Number of successful extensions: 25930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25892
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)