Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20f
         (574 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.8  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   2.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.2  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   3.2  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   4.3  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   4.3  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   5.6  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   5.6  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   7.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.5  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 2   VILLCCYVVIF*HV--SIRLLV*KLVFIYYCFDLLF 103
           +ILLC Y   +  +  ++ LL+   ++ +Y   LLF
Sbjct: 233 IILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLF 268


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 542 RCFRERERATLEFRSTQQ 489
           RC++ +E+ TL FR++ +
Sbjct: 703 RCYKMQEQFTLNFRNSDE 720


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 388 PLQSENNFRKIADNCPNGFNFCSPFKQV 305
           P ++E  FR++   CP  +N    F Q+
Sbjct: 304 PEEAETFFRELEAPCPRNYNPADYFIQL 331


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 388 PLQSENNFRKIADNCPNGFNFCSPFKQV 305
           P ++E  FR++   CP  +N    F Q+
Sbjct: 304 PEEAETFFRELEAPCPRNYNPADYFIQL 331


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 316 FKQVRHRRTSLFISLFTSN 260
           FK + HRR ++ ISL T N
Sbjct: 217 FKVLGHRRRAVEISLTTGN 235


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 203 VYRFKYFRKS*KLHFKLIFMYGTVLIL 123
           V  F+YF++   L  +L ++Y  V+++
Sbjct: 203 VSNFEYFQRKILLMIQLYYLYFDVIVI 229


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 203 VYRFKYFRKS*KLHFKLIFMYGTVLIL 123
           V  F+YF++   L  +L ++Y  V+++
Sbjct: 129 VSNFEYFQRKILLMIQLYYLYFDVIVI 155


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 18  VMLLFFDMFQFVYSFRNLYLYTI 86
           VML F D++  VY    ++ YT+
Sbjct: 248 VMLGFQDIYMIVYIIVVIFWYTV 270


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 18  VMLLFFDMFQFVYSFRNLYLYTI 86
           VML F D++  VY    ++ YT+
Sbjct: 248 VMLGFQDIYMIVYIIVVIFWYTV 270


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 316 FKQVRHRRTSLFISLFTSN 260
           FK + HR+ ++ ISL T N
Sbjct: 35  FKVLGHRQRAMEISLTTGN 53


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 571 STHSVCTHCFVVSGNER 521
           S+ + CT CF  +GN +
Sbjct: 688 SSDNPCTTCFCENGNNK 704


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,337
Number of Sequences: 336
Number of extensions: 3256
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)