Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20f
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    26   4.5  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   6.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.9  

>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 557 LHALLRCFRERERATLEFRSTQQ*SDSSLHTIVKI 453
           +H+LL+CFRE   A   FR  ++  +  +  + K+
Sbjct: 569 IHSLLKCFREAVDAKWNFRRQRERQEIIIQNVEKL 603


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 293 NLIVYFTFYFKFHIVTETINYFWLKVV 213
           NL+V+ T Y+ +++V + I   W K V
Sbjct: 174 NLLVHVTMYYYYYLVAKGIRVPWKKWV 200


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +1

Query: 1   GDFVMLLCCYFL--TCFNSFTRLETCIY 78
           G +V+LLCCY++  TC          IY
Sbjct: 314 GIYVLLLCCYYIFDTCNGQKNHFRNQIY 341


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 336 PLGQLSAIFRKLFSDCKGLFDLEMIEICLECEAMLKRIDDFYNRVQRAIGL 488
           P  QL        +DCK L D++ +  C+E +++     DF  +  R+ GL
Sbjct: 592 PSPQLQHHILNYLNDCKRLQDMDKLIPCIEYQSLDL---DFITKFSRSKGL 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,667
Number of Sequences: 5004
Number of extensions: 50649
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)