Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20f
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0062 + 530180-532398,533123-533213,533398-533613                 28   6.1  
07_03_1074 - 23766988-23767259,23767342-23767612,23768072-237682...    28   6.1  

>12_01_0062 + 530180-532398,533123-533213,533398-533613
          Length = 841

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 467 CAKSYRTIVEWNEIQE*LSLVPGNNEAMRANR 562
           C+ ++R IV WNEI     L   + +AMR  R
Sbjct: 354 CSLTFRNIVTWNEIIAGYGLFSHSEDAMRLFR 385


>07_03_1074 -
           23766988-23767259,23767342-23767612,23768072-23768241,
           23768337-23768549,23769896-23770145
          Length = 391

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 358 IADNCPNGFNFCSPFKQVRHRRTSLFISLFTSNSI 254
           I  N   G NF +    +R + TSLF+S F+  S+
Sbjct: 99  IGSNFTQGANFATAGSSIRRQNTSLFLSGFSPISL 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,993
Number of Sequences: 37544
Number of extensions: 250949
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)