Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d20f
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)                  30   1.2  
SB_42263| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_10510| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)                 29   3.6  
SB_578| Best HMM Match : 7tm_1 (HMM E-Value=0.027)                     28   6.2  

>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
          Length = 492

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 444 RIDDFY-NRVQRAIGLLLSGTKFKSSSLSFPETTKQCVQTECVE 572
           R+DDF  +   R++  L+     KS   SFPE  K+ ++ EC++
Sbjct: 70  RLDDFSEDEPTRSLSGLILKNNVKSHYHSFPEEVKEFIKAECLQ 113


>SB_42263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 315 NGEQKLKPLGQLSAIFRKLFSDCKGLFDLEMIEICLECE-AMLKRIDDFYNRVQRAI 482
           +G QK K  G L  I ++L   C G+ DL    +CL CE  M KR+     R+  A+
Sbjct: 55  HGGQKKK--GDLPQITKRLEKRCYGVADLPATILCL-CEITMAKRLRGKIRRINEAL 108


>SB_10510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 372 IIFEK*QIIALMVSTSVPHSNKCGIEEPHCLFHFLLQIPYCNRNYKLFLVKSC 214
           +  ++ Q   L + T +   +K     P C F+F +Q+     N+K+ L  SC
Sbjct: 15  VAIKRLQTSILSIDTIIVQHSKFCENLPVCAFYFRVQVHQSQHNFKVILPASC 67


>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
          Length = 635

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 411 EICLECEAMLKRI-DDFYNRVQRAIGLLLSGTKFKSSSLSFPETTKQCVQTECVE 572
           ++C E +   + +    Y + QR + L  SG     +S   P  +K C Q  CV+
Sbjct: 57  KVCYEQKVAYRTVYKQLYRKAQRTVLLCCSGWAQSGNSCPTPICSKGCAQGVCVK 111


>SB_578| Best HMM Match : 7tm_1 (HMM E-Value=0.027)
          Length = 301

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 273 FLLQIPYCNRNYKLFL 226
           + L +P+CN+N++LFL
Sbjct: 11  YFLTLPHCNKNFRLFL 26


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,133,412
Number of Sequences: 59808
Number of extensions: 336252
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)