Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11d20f
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 29 3.1
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 29 3.1
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 29 3.1
U23484-17|AAK68296.1| 367|Caenorhabditis elegans Tudor domain p... 29 3.1
AF303251-1|AAG50209.1| 367|Caenorhabditis elegans 2F713 protein. 29 3.1
AF063007-7|AAC16428.1| 659|Caenorhabditis elegans Hypothetical ... 29 3.1
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 29 3.1
U61953-2|AAC48081.1| 356|Caenorhabditis elegans Seven tm recept... 28 5.4
U12965-5|AAA20612.2| 346|Caenorhabditis elegans Serpentine rece... 28 5.4
Z81050-10|CAB02860.1| 329|Caenorhabditis elegans Hypothetical p... 27 9.5
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 426 CEAMLKRIDDFYNRVQRAIGLLLS-GTKFKSSSLSFPET 539
CE+++K++ D N +Q I ++LS GTK+ + ++ P T
Sbjct: 149 CESLVKKLKDKKNDLQNLIDVVLSKGTKY-TGCITIPRT 186
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 426 CEAMLKRIDDFYNRVQRAIGLLLS-GTKFKSSSLSFPET 539
CE+++K++ D N +Q I ++LS GTK+ + ++ P T
Sbjct: 245 CESLVKKLKDKKNDLQNLIDVVLSKGTKY-TGCITIPRT 282
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 426 CEAMLKRIDDFYNRVQRAIGLLLS-GTKFKSSSLSFPET 539
CE+++K++ D N +Q I ++LS GTK+ + ++ P T
Sbjct: 211 CESLVKKLKDKKNDLQNLIDVVLSKGTKY-TGCITIPRT 248
>U23484-17|AAK68296.1| 367|Caenorhabditis elegans Tudor domain plus
rrm motif protein1 protein.
Length = 367
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 429 RIPNIFQSFPSRISLC 382
++P +FQS P+R+SLC
Sbjct: 230 QLPKVFQSMPTRVSLC 245
>AF303251-1|AAG50209.1| 367|Caenorhabditis elegans 2F713 protein.
Length = 367
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 429 RIPNIFQSFPSRISLC 382
++P +FQS P+R+SLC
Sbjct: 230 QLPKVFQSMPTRVSLC 245
>AF063007-7|AAC16428.1| 659|Caenorhabditis elegans Hypothetical
protein R119.5 protein.
Length = 659
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -3
Query: 320 PIQTSAA*KNLIVYFTF---YFKFHIVTETINYFWLKVVFCAVYRFKYFRKS*KLHFKLI 150
P + A +NL+++FT +F+F + E N+F LK+ ++ F + S + ++
Sbjct: 405 PATENRAVQNLLIFFTLRLVFFRFLKILEFNNFFRLKLRIKTIFNFLKIKISNCVDSEIF 464
Query: 149 FMYGTVLILYPAYFLK 102
Y + PAY L+
Sbjct: 465 HFY--FRNVAPAYVLE 478
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 426 CEAMLKRIDDFYNRVQRAIGLLLS-GTKFKSSSLSFPET 539
CE+++K++ D N +Q I ++LS GTK+ + ++ P T
Sbjct: 149 CESLVKKLKDKKNDLQNLIDVVLSKGTKY-TGCITIPRT 186
>U61953-2|AAC48081.1| 356|Caenorhabditis elegans Seven tm receptor
protein 185 protein.
Length = 356
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 69 LYLYTIVLISSFEKIGWI*D*NSTVHKNQFKM*FLRFTEIFKSINSTKHNF*PKIIY--S 242
+Y Y ++ ISSFE + + D + + +K F+ F S +H+F +IY
Sbjct: 43 MYKYLMIYISSFEALYSLWDVTTEPMVHSYKAAFVVFRNFKNSDFDREHSFILIVIYCGC 102
Query: 243 FGYNM 257
FG+++
Sbjct: 103 FGFSL 107
>U12965-5|AAA20612.2| 346|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 11 protein.
Length = 346
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -3
Query: 272 FYFKFHIVTETINYFWLKVVFCAVYRFKYFRKS*KLHFKL--IFMYGTVLILYPAYFL 105
F +++V + NY+ + + FC+V+ YF L FKL +G + ++ +YF+
Sbjct: 12 FNLAYNLVFQASNYYQMIISFCSVFPLIYF-----LLFKLSKSSFHGNLKTIFISYFV 64
>Z81050-10|CAB02860.1| 329|Caenorhabditis elegans Hypothetical
protein C50B6.12 protein.
Length = 329
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 269 YFKFHIVTETINYFWLKVVFCAVYRFKYFRKS*KLHFKLIFMYGTVL 129
YF I++E YFW +F +Y Y + + IF Y T+L
Sbjct: 72 YFSHTILSEDFLYFW--TIFIDIYGGMYCSLITIIAVQFIFRYATLL 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,322,368
Number of Sequences: 27780
Number of extensions: 280693
Number of successful extensions: 902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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