Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11d19r
         (725 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C5Q6 Cluster: Chromosome undetermined scaffold_150, w...    36   0.77 
UniRef50_A2FMZ1 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_A0C5Q6 Cluster: Chromosome undetermined scaffold_150, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_150, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 2309

 Score = 36.3 bits (80), Expect = 0.77
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 81   KIKYVLTYIA-DKYNILLKVQYVRFRLVH*I*IFFCLTVKP*HQKREFPYSHQRFFTFHN 257
            K +YV  YI  D+Y ILL++Q+VR+++   I       V+  +     PY  Q   T   
Sbjct: 2222 KEQYVQKYIKFDQYGILLRLQFVRYQMKELIPDTITYAVQQINTNENMPYVLQLLKTLRK 2281

Query: 258  FQITYI 275
            F  TY+
Sbjct: 2282 FPNTYV 2287


>UniRef50_A2FMZ1 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 569

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
 Frame = +3

Query: 3   NPTLQHIHIVL*HSNYLFGNVIKLSPKIKY----VLTYIADKYNILL 131
           N  +Q++ +VL +S Y F N + LSPK++Y    ++ Y+  K NIL+
Sbjct: 111 NIDIQYLDLVL-NSLYFFFNHMTLSPKMQYLYFLIVDYVTSKQNILI 156


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,468,510
Number of Sequences: 1657284
Number of extensions: 12109332
Number of successful extensions: 18109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18105
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)